Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30756
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    90   1e-18
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 36/63 (57%), Positives = 51/63 (80%)
 Frame = -3

Query: 443 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDXRVRRRFKGQYLMPNIGYGSNKKTRHMLP 264
           +VKK+  +F RH+SDRY ++  +WRKP+GID RVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 263 NGF 255
           NG+
Sbjct: 71  NGY 73



 Score = 63.7 bits (148), Expect = 8e-11
 Identities = 33/58 (56%), Positives = 42/58 (72%)
 Frame = -2

Query: 267 PKWIRKVLVHNVKELEIXXMQNRKYCAEIAHGVSSKKRKLIVERAQQLSICRVTNAAA 94
           P   +KVLV NVK+L++  MQ+ KY  EI HGVS+K RK IVERA QL+I ++TN  A
Sbjct: 70  PNGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNI-KLTNGNA 126


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 455 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDXRVRRRFKGQYLMPNIGYGSNKK 282
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 281 TRHML 267
             + L
Sbjct: 61  AEYQL 65


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 455 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDXRVRRRFKGQYLMPNIGYGSNKK 282
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 281 TRHML 267
             + L
Sbjct: 61  AEYQL 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,713,246
Number of Sequences: 27780
Number of extensions: 203613
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)