Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30753
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    38   0.001
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    28   0.64 
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    26   3.4  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   4.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.9  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   5.9  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   7.9  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 249 MGGKPYDKNIKPSENISVSVFALXEGFHNYHHTXPWDYK 365
           +G +P+D       +   ++  L EG HNYHH  P DY+
Sbjct: 257 IGSQPFDDTNSARNHFITALVTLGEGNHNYHHAFPNDYR 295



 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 17  KRKGKGLDLSDLYADPILRFQKKYYLIL---MPIAWPS-FC 127
           +R G+  D+SDL +DP + F  +++L +   M   +PS FC
Sbjct: 182 RRIGRS-DVSDLNSDPFVMFNHRHFLPIASFMAFIFPSLFC 221


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 349 NVWW*LWNPSXSANTDTEMFSDGLIFL 269
           N+W   W P    NTDT  F  GLI L
Sbjct: 400 NIWHIWWAPIMYPNTDTPRFIKGLIGL 426


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 394 TSPPNFINFFAKIGWAYDLKTV 459
           T PP  +  FA++ WA +LK +
Sbjct: 177 TLPPKSLGTFARLPWASELKAI 198


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 121 ILPTVIPVYFWNESWINAFFVATLFR 198
           ILP  I +Y W  + I+ FF   L R
Sbjct: 335 ILPNQIQIYVWYGASISIFFALILLR 360


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 453  FQIVCPSNFSKEIDEIGW*SLICCYRVPLSC 361
            FQ+V  S+F  E+D +   SLI   R  L C
Sbjct: 3424 FQVVWKSDFIAEVDVLNNDSLIKTVRYSLKC 3454


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 384 NRLNFTTQFHQFLC*NWMGIR 446
           N ++F TQ   FLC  W+GI+
Sbjct: 77  NDMSFRTQAMLFLCYLWLGIQ 97


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1024

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 61   SHSSIPEKVL-FNSDANRLAFI-LPTVIPVYFWNESWINAFFVATLFRYTFXXNVTWLVN 234
            +H S   K+  F  D +RL    LP ++   FW++S ++   +   +R+      TW   
Sbjct: 853  AHESSANKLFSFVHDISRLTITKLPLLL--IFWSDSNLDMQGITQKYRFLELITSTWSAI 910

Query: 235  SAAH 246
            S+ H
Sbjct: 911  SSIH 914


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,392
Number of Sequences: 5004
Number of extensions: 42354
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)