Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30753
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...    29   2.6  
05_02_0037 + 5883285-5884292                                           27   5.9  
02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608           27   5.9  
04_04_1210 + 31761689-31762255,31762318-31762322,31763009-317631...    27   7.8  

>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 142 VYFWNESWINAFFVATLFRYTF 207
           +Y W +SWINA   A  + Y F
Sbjct: 209 IYVWGDSWINAKTQAECYHYLF 230


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -3

Query: 405 GW*SLICCYRVPLSCS-PMXMCGGSCGI 325
           GW    CC+  P S   P   CGG CG+
Sbjct: 298 GWCLFRCCWPSPPSVWWPRCGCGGGCGV 325


>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
          Length = 241

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 468 LVRYSFQIVCPSNFSKEIDEIGW*SLICCYRVPLSCSP 355
           LV  SF + CP++ S++ +E     L CC  +   C+P
Sbjct: 11  LVEESFFVGCPAHESRKKNEKNIFCLACCTSICPHCAP 48


>04_04_1210 +
           31761689-31762255,31762318-31762322,31763009-31763146,
           31774759-31775368
          Length = 439

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 189 SFPLYIYXECHMASELRCSQMGGKPYDKNIKPSENISVSVFALXEGFHNY 338
           SFP  IY  C ++S L+     G PY    +P        F L    HN+
Sbjct: 224 SFPA-IYANCRLSS-LKKELFMGHPYSAGDQPKPGAGTVEFVLHNTVHNW 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,761
Number of Sequences: 37544
Number of extensions: 278506
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)