Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30753
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   1.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   3.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.0  

>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 118 FILPTVIPVYFWNESWINAFFVATLFRYT 204
           F++PT +P       W +   VA  F+Y+
Sbjct: 190 FVVPTRVPATCCTTXWWSXXTVAXTFKYS 218


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +3

Query: 255 GKPYDKNIKPSENISVSVFALXEGFHNYHHTXPWDYKTAE 374
           G P      P      SV AL    H++HH  P  YK  E
Sbjct: 446 GSPATTAAPPQLPTEESVDALCNTLHHWHH-CPEIYKAIE 484


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 159 LIPKIHRNHCWQNEGQAIGI 100
           L+P++  NHC +   + IGI
Sbjct: 56  LLPEVLNNHCNRCTSRQIGI 75


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 234 LRCSQMGGKPYDKNIKPSEN 293
           L C ++GGK Y+ + +  E+
Sbjct: 47  LHCQEVGGKNYEHSTRQVED 66


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 314  TXRGIPQLPPH 346
            T  G+P+ PPH
Sbjct: 1076 TAEGVPEQPPH 1086


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 245 TNGGKTLRQEYQAIR 289
           + G  TLRQEY+ I+
Sbjct: 80  SQGSVTLRQEYKNIK 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,184
Number of Sequences: 438
Number of extensions: 2911
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)