Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30752
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 138 6e-34
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 137 9e-34
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.59
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 28 0.77
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 28 0.77
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 28 0.77
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 28 0.77
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 27 1.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 3.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 3.1
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.1
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 4.1
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 5.5
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 138 bits (333), Expect = 6e-34
Identities = 62/119 (52%), Positives = 80/119 (67%)
Frame = +3
Query: 129 GKDQFHIRMRLHPFHVIRINKMLSCXXXXXXXXXXXXCVWQAQGTVARVRIGQPIMSVRS 308
GKD FH+R+R HPFHV+RINKMLSC + G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140
Query: 309 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQY 485
D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC ++
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
Score = 87.4 bits (207), Expect = 1e-18
Identities = 48/90 (53%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Frame = +1
Query: 1 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVXRTAERI--SSISA*DFTLST 174
KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLV + + A F +
Sbjct: 39 KRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVR 98
Query: 175 LSASIKCYRALELXRLQTGMRGAFGKPRVL 264
++ + C A RLQTGMR AFGKP L
Sbjct: 99 INKMLSCAGA---DRLQTGMRHAFGKPNGL 125
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 137 bits (332), Expect = 9e-34
Identities = 62/119 (52%), Positives = 80/119 (67%)
Frame = +3
Query: 129 GKDQFHIRMRLHPFHVIRINKMLSCXXXXXXXXXXXXCVWQAQGTVARVRIGQPIMSVRS 308
GKD FH+R+R HPFHV+RINKMLSC + G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140
Query: 309 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQY 485
D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC ++
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
Score = 87.4 bits (207), Expect = 1e-18
Identities = 48/90 (53%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Frame = +1
Query: 1 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVXRTAERI--SSISA*DFTLST 174
KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLV + + A F +
Sbjct: 39 KRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVR 98
Query: 175 LSASIKCYRALELXRLQTGMRGAFGKPRVL 264
++ + C A RLQTGMR AFGKP L
Sbjct: 99 INKMLSCAGA---DRLQTGMRHAFGKPNGL 125
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.59
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 331 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCSTAPEHGPL 507
SS + +P SSS STY S + S ++S S + ++SP+ ++S S P L
Sbjct: 651 SSSISTIPISSS----LSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSL 705
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 0.77
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -2
Query: 497 CSGAVLHDAAVIGEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 327
C+ ++ A +A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 253 CTSVTTYENA--SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 0.77
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -2
Query: 497 CSGAVLHDAAVIGEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 327
C+ ++ A +A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 253 CTSVTTYENA--SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 28.3 bits (60), Expect = 0.77
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -2
Query: 497 CSGAVLHDAAVIGEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 327
C+ ++ A +A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 225 CTSVTTYENA--SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 0.77
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -2
Query: 497 CSGAVLHDAAVIGEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 327
C+ ++ A +A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 253 CTSVTTYENA--SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 267 ARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSK 395
AR+ IG+ + + K AL++A F PG+ +I V +
Sbjct: 139 ARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQ 181
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +1
Query: 331 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCSTAPEHGP 504
SS + P+S+S + S+ S S +++ S+ S ++SP +++S ++ P
Sbjct: 293 SSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSP 350
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 301 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 459
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 58 EQLSSEALEAGRICCNKYLVXRTAERISSISA 153
E LSS+ + RICCN A+ +S+
Sbjct: 262 ESLSSQQMSCLRICCNSSSFWSAADSFKEVSS 293
>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 158
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 255 GLAKRTTHPSLEPXXLQRTITFY*CG*RGKGEVSCGYGTDPFRSS 121
GL+ TH P LQ + FY G + GY + FR+S
Sbjct: 2 GLSTSNTHILNSPQQLQYKMAFYYKNNLGYQNIPYGYQLNDFRAS 46
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 332 DLCLPPVTRAHGHDGLSNANTCYSTLGLPNAP 237
D + ++ G++ L + YSTL LPN P
Sbjct: 236 DTKMKVISDKEGYESLKDLPPAYSTLTLPNLP 267
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 331 SSRLCAVPSSSSPDVKRSTYQRSGVS 408
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 52 EYEQLSSEALEAGRICCNKYLVXRTAERISSIS 150
E E+L++ ALE G +L RT ISS+S
Sbjct: 340 EREKLNAHALEVGTWAFCDFLFGRTYNVISSMS 372
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 1 KRANVDDFPLCVHLVSDEYEQLSSEALEAG 90
KRA +D LC+ +S + E ++ +LE+G
Sbjct: 65 KRAALDTLRLCLKRISPDAELVAFGSLESG 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,382
Number of Sequences: 5004
Number of extensions: 46011
Number of successful extensions: 185
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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