Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30752
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 139 2e-33
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 137 6e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 133 8e-32
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 31 0.79
07_03_1509 - 27246721-27247350 29 2.4
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 29 3.2
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 4.2
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 4.2
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 7.3
03_04_0233 + 19063780-19064404,19065480-19065601 27 7.3
09_03_0140 + 12700740-12700935,12701082-12701515 27 9.7
08_02_0567 + 18769742-18769790,18769928-18771351 27 9.7
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 27 9.7
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 139 bits (336), Expect = 2e-33
Identities = 66/120 (55%), Positives = 81/120 (67%)
Frame = +3
Query: 123 NCGKDQFHIRMRLHPFHVIRINKMLSCXXXXXXXXXXXXCVWQAQGTVARVRIGQPIMSV 302
N GKD FH+R+R+HPFHV+RINKMLSC + QGT ARV IGQ ++SV
Sbjct: 79 NAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSV 138
Query: 303 RSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQ 482
R + EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q
Sbjct: 139 RCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQ 198
Score = 77.4 bits (182), Expect = 7e-15
Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVXRTAERI--SSISA*DFTLST 174
K+ VD+FP CVHLVS E E +SSEALEA RI CNKY+ + + F +
Sbjct: 39 KKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLR 98
Query: 175 LSASIKCYRALELXRLQTGMRGAFGKPR 258
++ + C A RLQTGMRGAFGKP+
Sbjct: 99 INKMLSCAGA---DRLQTGMRGAFGKPQ 123
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 137 bits (331), Expect = 6e-33
Identities = 64/116 (55%), Positives = 78/116 (67%)
Frame = +3
Query: 123 NCGKDQFHIRMRLHPFHVIRINKMLSCXXXXXXXXXXXXCVWQAQGTVARVRIGQPIMSV 302
+ GKD FH+R+R+HPFHV+RINKMLSC + QGT ARV IGQ ++SV
Sbjct: 75 SAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSV 134
Query: 303 RSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDG 470
R EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 135 RCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
Score = 71.7 bits (168), Expect = 3e-13
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVXRTAERI--SSISA*DFTLST 174
K+ VD+F CVHLVS E E ++SEALEA RI CNKY+ + + F +
Sbjct: 35 KKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLR 94
Query: 175 LSASIKCYRALELXRLQTGMRGAFGKPR 258
++ + C A RLQTGMRGAFGKP+
Sbjct: 95 INKMLSCAGA---DRLQTGMRGAFGKPQ 119
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 133 bits (322), Expect = 8e-32
Identities = 62/116 (53%), Positives = 78/116 (67%)
Frame = +3
Query: 123 NCGKDQFHIRMRLHPFHVIRINKMLSCXXXXXXXXXXXXCVWQAQGTVARVRIGQPIMSV 302
+ GKD FH+R+ HP+HV+RINKMLSC + GT ARVRIGQ ++SV
Sbjct: 386 HAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSV 445
Query: 303 RSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDG 470
R D A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL+ EGR+ DG
Sbjct: 446 RCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDG 501
Score = 79.8 bits (188), Expect = 1e-15
Identities = 43/87 (49%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVXRTAERI--SSISA*DFTLST 174
K+ + DDFPLCVHLVS E E +SSEALEA RI CNKY+ + + A + +
Sbjct: 346 KKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLR 405
Query: 175 LSASIKCYRALELXRLQTGMRGAFGKP 255
++ + C A RLQTGMRGAFGKP
Sbjct: 406 INKMLSCAGA---DRLQTGMRGAFGKP 429
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 30.7 bits (66), Expect = 0.79
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -2
Query: 185 DADNVERVKSHADMELILSAVLXTRYLLQQIR----PASKASELSCSYSSDTKCTHSGKS 18
+ DN+ V AD L+++A + QQ + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 17 S 15
+
Sbjct: 203 A 203
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +1
Query: 280 LDNPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 408
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 540 EESQPEPSSKRERSMFRGGTARCSRHWRGGPLHAAS 433
E++Q E +RE +FR G+A + G LHAA+
Sbjct: 14 EQAQAEADRERELDLFRSGSAPPTVEGSMGALHAAA 49
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 10 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 102
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Frame = -3
Query: 250 CQTHHASQSGAYXAPAHDNILLMRITWKG*SLMRIWN*SFPQFXLRGTYCSRYVL----- 86
C+ H P L+ + S+ + + PQF L+ CSR ++
Sbjct: 438 CKPHRGPNGSTLPGPCESPALIKFVASSDVSVQGLRMENSPQFHLKFDGCSRVLVDGLVV 497
Query: 85 ---PPKPLSSAVHIRRTPSARTVESR 17
P + VH+ T S R + SR
Sbjct: 498 SSPASSPNTDGVHVENTSSVRILNSR 523
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 116 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 15
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>03_04_0233 + 19063780-19064404,19065480-19065601
Length = 248
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 405 FTKYERDEFEKLREEGRLANDGCIVQYRPGTWTSRAWRKVQAEIP 539
FT ++ EFE + ++ R +Q R GT + RKV A+ P
Sbjct: 40 FTPEQKKEFEAMLQQARDQFLNSFMQTRKGTLVQKYKRKVVADDP 84
>09_03_0140 + 12700740-12700935,12701082-12701515
Length = 209
Score = 27.1 bits (57), Expect = 9.7
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 267 ARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLRE 446
A V + R S R V++A+ R + G + + ++ G + E +R+
Sbjct: 70 AAVAVSTAAAGWRDSGRGGRGVVKAVARPR----GWRGLPCRRRGGQRRVAVVEASVVRQ 125
Query: 447 EGRLANDGCIVQYRPGTWTSRAWR 518
+ G V+ RP TW+SRA R
Sbjct: 126 REGVMETGGGVESRPATWSSRAAR 149
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 267 ARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 383
A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 38 AHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 374 TSGELELGTA-QSLDDLCLPPVTRAHGHDGLSNANTCYSTLGLPNA 240
+S + E+ A +SL C P V A GHD N YS L P A
Sbjct: 4930 SSPQSEIKAAYRSLQKRCHPDVAGAKGHDMAIVLNEVYSLLSDPAA 4975
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,501,301
Number of Sequences: 37544
Number of extensions: 355139
Number of successful extensions: 1113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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