Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30752
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   136   1e-32
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z49969-5|CAA90269.1|  224|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  136 bits (328), Expect = 1e-32
 Identities = 65/120 (54%), Positives = 80/120 (66%)
 Frame = +3

Query: 123 NCGKDQFHIRMRLHPFHVIRINKMLSCXXXXXXXXXXXXCVWQAQGTVARVRIGQPIMSV 302
           NCGKD FH+R+R HPFHV RINKMLSC               + QG VARV IG  + S+
Sbjct: 79  NCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSM 138

Query: 303 RSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQ 482
           R  +      IEA RRAKFKFPGRQ I  S+KWGFTK++R+++E++R EGRL +DG  VQ
Sbjct: 139 RIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQ 198



 Score = 83.4 bits (197), Expect = 9e-17
 Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
 Frame = +1

Query: 1   KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVXRTAER--ISSISA*DFTLST 174
           KRANVD FP CVH++S+E E LSSEALEA RIC NKY+V    +      +    F ++ 
Sbjct: 39  KRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTR 98

Query: 175 LSASIKCYRALELXRLQTGMRGAFGKPRVL 264
           ++  + C  A    RLQTGMRGA+GKP+ L
Sbjct: 99  INKMLSCAGA---DRLQTGMRGAYGKPQGL 125


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 405 FTKYERDEFEKLREEGRLANDGCIVQYR 488
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


>Z49969-5|CAA90269.1|  224|Caenorhabditis elegans Hypothetical
           protein W01C9.5 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 369 GRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPGTWTSRAWR 518
           G   + +  + GF+  E D F+++  E  L  DG     +    TSRAWR
Sbjct: 111 GANHVCLKHESGFSTQEWDRFQEIMVEVILKQDG----VKQSKETSRAWR 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,171,406
Number of Sequences: 27780
Number of extensions: 272439
Number of successful extensions: 752
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)