Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30752
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.1  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 37  HLVSDEYEQLSSEALEAGRICCNKYLVXRTAERISSISA*DFT 165
           H V D YE+  +E +       + +L+    E I  I   DF+
Sbjct: 58  HFVKDIYEKYKNEPMVGLYATRSPFLLLNDPELIKDILIRDFS 100


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 468 RHWRGGPLHAASQTHHVHTL*NPTSLIRRSFD 373
           R WR        +  +VHT+  P  L+R S D
Sbjct: 116 RIWRPDTYFYNGKHSYVHTITVPNKLLRISQD 147


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 110 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTFA 6
           YL+    PAS    LS + +S T  +    SST A
Sbjct: 816 YLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAA 850


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,717
Number of Sequences: 438
Number of extensions: 3247
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)