Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30751
(394 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 103 1e-23
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 58 5e-10
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 53 1e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 46 3e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 33 0.016
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 32 0.037
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 29 0.34
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 1.8
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 26 1.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 103 bits (246), Expect = 1e-23
Identities = 44/45 (97%), Positives = 44/45 (97%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 390
GDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPE
Sbjct: 55 GDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 99
Score = 92.3 bits (219), Expect = 2e-20
Identities = 40/45 (88%), Positives = 42/45 (93%)
Frame = +2
Query: 119 VVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRXQGVMVGMGQKDSY 253
V+DNGSGMC AGFAGDDAPRAVFPSIVGRPR G+MVGMGQKDSY
Sbjct: 9 VIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSY 53
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.0 bits (134), Expect = 5e-10
Identities = 20/58 (34%), Positives = 42/58 (72%)
Frame = +1
Query: 220 RDGRYGTEGLL*GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEG 393
+ G + ++ GDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P G
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRG 100
Score = 42.3 bits (95), Expect = 3e-05
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2
Query: 119 VVDNGSGMCXAGFAGDDAPRAVFPSIVGRP 208
V+DNG+G G+A D+ PR FPSIVGRP
Sbjct: 7 VLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 53.2 bits (122), Expect = 1e-08
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +2
Query: 122 VDNGSGMCXAGFAGDDAPRAVFPSIVGRPRXQGVMVGMGQKDSY 253
+DNGSG AGFAGDD P+ +FP+ VGR + + VM QKD +
Sbjct: 14 IDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMF 57
Score = 52.8 bits (121), Expect = 2e-08
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPE 390
G EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PE
Sbjct: 59 GSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPE 104
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 45.6 bits (103), Expect = 3e-06
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 256 GDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 390
G++A K +L YPI HG + NWD ME+ W + + LR PE
Sbjct: 77 GNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPE 122
Score = 38.7 bits (86), Expect = 3e-04
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 119 VVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRXQGVMVG--MGQKDSY 253
++DNG+G G+AG+DAP VFP+++ R G G + K SY
Sbjct: 9 IMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSY 54
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 33.1 bits (72), Expect = 0.016
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 119 VVDNGSGMCXAGFAGDDAPRAVFPSIVGRPR 211
V+DNGS AG+ G+ P+ VF ++V R R
Sbjct: 28 VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 30.7 bits (66), Expect = 0.084
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 220 RDGRYGTEGLL*GDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTF 363
RD + L G++ + G ++ + P E +++NWD ME++ +TF
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTF 106
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 31.9 bits (69), Expect = 0.037
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 119 VVDNGSGMCXAGFAGDDAPRAVFPSIVG 202
V+D GS GF+G+D P+ V PS G
Sbjct: 15 VIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 286 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 387
+ +K I +G V NWD +W + +L+ P
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNP 96
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 30.3 bits (65), Expect = 0.11
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 333 IPVSDDSVFDGVFEGQDTSFALCLISS*ESFCPIPTITP*XRGLPTIEGNTARGASSPAK 154
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 153 PALHIP 136
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 28.7 bits (61), Expect = 0.34
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 119 VVDNGSGMCXAGFAGDDAPRAVFPSIVG 202
V+D GS G+AG+++P + PS G
Sbjct: 14 VIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 237 PIPTITP*XRGLPTIEGNTARGASSPAKPAL 145
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 1.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 298 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEG 393
YP G++ +W ++E + E+R+ P+G
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPKG 275
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 301 PIEHGIVTNWDDMEKIWHHTF 363
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,759
Number of Sequences: 5004
Number of extensions: 30848
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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