Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30751
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.24 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.24 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   3.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   8.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 260 SPHKSPSVPYRPSRPDXGAFPRSRG 186
           SPH+SP  P R S P+    P   G
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGG 50


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 292 GSGYLFCSVPHLLIRVLLSHTDHHALXXGPSHDRGEHGARSIISC 158
           GS Y+   VP    RVLL+ TD   +    S D  E+G     +C
Sbjct: 329 GSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYGIIGPTTC 373


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -1

Query: 346 SSPCHPS**RFRVRWGI*GSGYLFCSVPHLLIRVLLSH 233
           +SP H S  +  +  G+    +L C VP   + ++ S+
Sbjct: 260 TSPYHVSDHKAAITVGVIMGVFLICWVPFFCVNIVTSY 297


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 110 RVWVVDNG 133
           R+WV+DNG
Sbjct: 135 RLWVLDNG 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,526
Number of Sequences: 438
Number of extensions: 2213
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)