Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30750
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.21 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    27   0.21 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.9  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   5.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 554 LPPRRRNCCRPSLEKTKPRLPLRSKHYGV 640
           + PR++NCCR  L K     P RSK   V
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSKRIDV 417


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 554 LPPRRRNCCRPSLEKTKPRLPLRSKHYGV 640
           + PR++NCCR  L K     P RSK   V
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSKRIDV 417


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 18  QDEFPQAAEEACSLCYAMW*KEG 86
           +DEF +  +  CSLC   + ++G
Sbjct: 263 EDEFDEFGDSKCSLCQRRFEEQG 285


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 379 RCLSIFLAVLYFRSNFLKTLCLC 311
           RC+ +FL+V+   S F+  +  C
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPC 28


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 536 LACLLHFIAGASAWSLSIFVP-GLLSLL 456
           LAC + F+     + + I++P GL+ ++
Sbjct: 210 LACEIQFVRSMGYYLIQIYIPSGLIVII 237


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 536 LACLLHFIAGASAWSLSIFVP-GLLSLL 456
           LAC + F+     + + I++P GL+ ++
Sbjct: 210 LACEIQFVRSMGYYLIQIYIPSGLIVII 237


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 536 LACLLHFIAGASAWSLSIFVP-GLLSLL 456
           LAC + F+     + + I++P GL+ ++
Sbjct: 149 LACEIQFVRSMGYYLIQIYIPSGLIVII 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,276
Number of Sequences: 438
Number of extensions: 4230
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)