Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30749
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926...    29   2.0  
04_04_1586 - 34621945-34623366                                         28   4.6  
06_01_0092 - 775290-775691                                             28   6.1  
06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492...    27   8.1  

>01_01_1165 -
           9267891-9268145,9268395-9268510,9268991-9269127,
           9269645-9269808,9269892-9269972,9270783-9270962,
           9271489-9271929,9273234-9273344,9274355-9274463,
           9274618-9274643,9274823-9274903,9275013-9275211,
           9275374-9275449,9275553-9275769,9276117-9276155,
           9276684-9276783,9276962-9277084,9277171-9277895
          Length = 1059

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 564 ATFAGFPRQALNRGLPLGFDLVLYGTSTPKNLIRVMVHVVG 442
           AT  GFP Q      P  FD+VL GT  P++++       G
Sbjct: 6   ATGGGFPAQDYPTIDPTSFDVVLCGTGLPESVLAAACAAAG 46


>04_04_1586 - 34621945-34623366
          Length = 473

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 429 YQGDGPLREPSP*SSFLGSRCRKALNRTLKG 521
           Y    PL +P+  SSF G  C  A+ RTL G
Sbjct: 165 YAQTDPLFDPAASSSFSGVSCGSAICRTLSG 195


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 179 RASSLLRQLAKGGCAARR 126
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>06_03_0812 +
           24847716-24847988,24848123-24848221,24848977-24849229,
           24850064-24850174,24850558-24850694,24850821-24850934,
           24851025-24851224,24851366-24851560,24851636-24851795
          Length = 513

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 516 LGFDLVLYGTSTPKNLIRVMVHVVGHRPDRRF 421
           L   ++L+      +++ V VH+ G RPDRR+
Sbjct: 22  LAMSVMLFVEKVYMSVVLVGVHLFGRRPDRRY 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,941,275
Number of Sequences: 37544
Number of extensions: 357656
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)