Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30749
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   7.2  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   7.2  
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +3

Query: 315 IPYKSKE*TEIGLSVVPVWNKSPLLKNVDSNVKGRKTVYQGDGPLREPSP*SSFLGSRCR 494
           + Y++ E T+ GL  V    K+  LK  D ++    T +     L E S  S+ +  +C 
Sbjct: 244 LSYQTTEVTKKGLGKVEE-KKAVALK--DGHMDDCYTFFMA---LEEESK-SARVIRKCS 296

Query: 495 KALNRTLKGAPDLELDGESRRTW 563
             LN+ LKG   L+L+G     W
Sbjct: 297 SVLNKFLKGIDALQLEGNQSTDW 319


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +3

Query: 315 IPYKSKE*TEIGLSVVPVWNKSPLLKNVDSNVKGRKTVYQGDGPLREPSP*SSFLGSRCR 494
           + Y++ E T+ GL  V    K+  LK  D ++    T +     L E S  S+ +  +C 
Sbjct: 365 LSYQTTEVTKKGLGKVEE-KKAVALK--DGHMDDCYTFFMA---LEEESK-SARVIRKCS 417

Query: 495 KALNRTLKGAPDLELDGESRRTW 563
             LN+ LKG   L+L+G     W
Sbjct: 418 SVLNKFLKGIDALQLEGNQSTDW 440


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 372 NKSPLLKNVDSNVK--GRKTVYQGDGPLREPSP*SSFLGSRCRKALNRTLKGAPDLELDG 545
           NK P  KNV+S VK    K+      P R+ S   S L     +  + T   +  L++DG
Sbjct: 5   NKDPKQKNVESGVKLFEEKSRKSNRSPTRQKSINKSLLSLDKTQEFSET---SQKLKIDG 61

Query: 546 ESR 554
           E+R
Sbjct: 62  ENR 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,089
Number of Sequences: 27780
Number of extensions: 286032
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)