Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30745
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0012 + 17147764-17148141,17148316-17148465,17149360-171497...    29   2.7  
04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738     28   4.7  
03_05_0146 - 21260967-21261055,21261464-21261568,21261851-212619...    28   4.7  

>01_05_0012 +
           17147764-17148141,17148316-17148465,17149360-17149729,
           17149898-17150015,17150121-17150226,17150326-17150418,
           17150498-17150593,17151169-17151891,17152012-17152160,
           17153434-17153520,17153541-17153625
          Length = 784

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 328 AHLRRRSLWAPVTT*HLVGCELVHPIGNKVFLSFHEFE 215
           AHL  R LWA       +GC   H +G+ ++  F+E E
Sbjct: 152 AHLAERVLWAFRCYRVRLGCARSHKVGDAIWAEFNENE 189


>04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738
          Length = 707

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 462 HKRSYH-HSLLHNNYGNLDHFCADGLI*CSL 551
           H  SY  +   HN  G  D FC DG++ C L
Sbjct: 302 HPESYPCYGECHNKDGGFDCFCRDGVVACIL 332


>03_05_0146 -
           21260967-21261055,21261464-21261568,21261851-21261936,
           21262144-21262253,21262370-21262474
          Length = 164

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 519 SGLSYHSYYGAMSGGKTSCESARVGTTALPISAVKQ 412
           S L Y+S YG  SGG +   S R+   A+ +S   Q
Sbjct: 61  SNLPYNSDYGYSSGGNSCSTSERLARPAVQVSRAGQ 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,220,508
Number of Sequences: 37544
Number of extensions: 345059
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)