Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30745
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    32   0.26 
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    28   4.2  
Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 382 LPHPSTQNALLLHCRNRQGGGTYPCGLTRGLTTTHCSIITMVT 510
           LP+ S  N  ++ CRN   G +  C    GL + HC   T VT
Sbjct: 156 LPYYSGANCEVVTCRNNGIGSSGRCSCPPGLYSAHCEARTCVT 198


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 244 YCL*GGRAHSPPGVKWLLEPIDFYDVNAP 330
           YCL      SP   KWL EPI ++D +AP
Sbjct: 616 YCLVAMEFISPIQTKWLAEPI-YHDFDAP 643


>Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 175 KHYFCAYCFLSTQIQIHENLKKPYC 249
           +H FC  C  S    +H NLK P C
Sbjct: 59  QHTFCYPCLESCADTLHRNLKCPEC 83


>Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 175 KHYFCAYCFLSTQIQIHENLKKPYC 249
           +H FC  C  S    +H NLK P C
Sbjct: 59  QHTFCYPCLESCADTLHRNLKCPEC 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,616,426
Number of Sequences: 27780
Number of extensions: 284011
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)