Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30744
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   0.64 
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   0.85 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   1.1  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   2.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   2.6  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    24   6.0  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    24   6.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    24   7.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    24   7.9  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 112  ICFSIPLIGIFLVYILYIYRYS 177
            IC+S P+  I +V + ++YRY+
Sbjct: 1037 ICYSSPMFMILIVPLFFLYRYN 1058


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 104 ICKFVFQFL*LAFFWFIFCTYIDIVCVELVLTEKLLIDYLHMIV 235
           I  F+F +L L F   IF T++     ELVL+  L+   L + V
Sbjct: 428 ITVFIFLYLMLTFIGIIFSTFMTSEDAELVLSYDLMSKSLFISV 471


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 152 IFCTYIDIVCVELVLTEKL 208
           ++ T++D+V  E+V+TEKL
Sbjct: 463 VYLTHLDVVDTEIVMTEKL 481


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 90  FIALSFVNLFFNSSNWHFFGL 152
           F  +SF N FF S  W FF L
Sbjct: 227 FNLVSFPNYFFESLGWLFFAL 247


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 143  FWFIFCTYIDIVCVELVLTEKL 208
            F+ + CT++ ++ V LVL +KL
Sbjct: 1773 FFALLCTFVAMIVVPLVLDQKL 1794


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 38  YTVMCILFL*FEYYFGHIYSFVICKFVFQFL*LAFFW 148
           Y V+ +  L  +  + HI+  +I + +F    LA+FW
Sbjct: 197 YLVLLLQILGPKKTWMHIFVIIIVQILFSIPFLAYFW 233


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 248 HNQNLQSCEDNQSIVFQ 198
           +NQN+QS  D++S+V +
Sbjct: 868 YNQNMQSMSDSKSVVIE 884


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 112  ICFSIPLIGIFLVYILYIYRYS 177
            IC+S PL  + +V + ++Y Y+
Sbjct: 1039 ICYSAPLSLLLIVPLFFLYLYN 1060


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 170 DIVCVELVLTEKLLIDYLHMI-VSFDY 247
           DI+ V   LTE+ L DY  +I + F+Y
Sbjct: 331 DIIVVSTFLTEEGLTDYQRVIKILFEY 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,421,973
Number of Sequences: 5004
Number of extensions: 26822
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)