Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30744
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0178 - 26513403-26513983,26515295-26515949                       26   7.4  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    26   7.4  
09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759...    26   9.8  
05_07_0303 - 29093045-29093176,29093332-29093451,29093570-290939...    26   9.8  

>02_05_0178 - 26513403-26513983,26515295-26515949
          Length = 411

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 124 IPLIGIFLVYILYIY 168
           +P++GI LVY+LY Y
Sbjct: 26  LPILGILLVYLLYRY 40


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 175 YIYICTKYKPKKCQLEELKNKFTNDKAINMAKVIFKS 65
           YI+ CT      C++ ++ +   NDK+ ++ + IFK+
Sbjct: 175 YIWTCTDCHVLGCEVHQIPSVLNNDKSFDLHE-IFKT 210


>09_03_0101 +
           12374771-12374926,12375505-12375731,12375816-12375971,
           12376066-12376251,12376407-12376591,12376984-12376991
          Length = 305

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 17  YLVVTT*YTVMCILFL*FEYYFGHIYSFVICKFVFQFL*LAFFWFI 154
           +++ +T Y V+  L      ++G IY +V    +F  L L  +W++
Sbjct: 236 WILRSTSYEVLLTLDKEKHKFYGPIYYYVFNSLLFSLLVLHIYWWV 281


>05_07_0303 -
           29093045-29093176,29093332-29093451,29093570-29093985,
           29094163-29094208
          Length = 237

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 90  FIALSFVNLFFNSSNWHFFGLYFVH 164
           F+   ++  F N + W F+GL F+H
Sbjct: 43  FVPDPYLATFLNCALWVFYGLPFIH 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,677,397
Number of Sequences: 37544
Number of extensions: 123619
Number of successful extensions: 240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)