Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30739
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.12 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   0.49 
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.5  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   4.6  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    26   6.1  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 29.5 bits (63), Expect(2) = 0.12
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -2

Query: 453 FNYANKRNTLNLACHANYTNISLIIHNQ---RPYVSRGK*TDQTIKNSSCPSVNHNST 289
           FNY N  N  N + H  + N     +NQ     Y+S G+  +Q+ +N+   +VN+ ST
Sbjct: 324 FNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSANQSPRNNP-QNVNNGST 380



 Score = 20.6 bits (41), Expect(2) = 0.12
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 618 HEDRTESSHYVNNRYCH 568
           H DR  +SH   N+Y H
Sbjct: 303 HYDRYGNSHPSYNKYSH 319


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 18/80 (22%), Positives = 40/80 (50%)
 Frame = -3

Query: 353 EESKQIKLLKTVVALPSTITRRDVIRPSTTLQVNKDTYFPLDKFNILILRDNVTVKQSAP 174
           E++ +I+ L+  ++LP   + +  I+PS+++           +  +  +      K+ AP
Sbjct: 513 EDTSEIESLQGKLSLPQVSSTQQEIQPSSSVPEAASNEIAEKEPAVTAIESITERKEEAP 572

Query: 173 VIRTTTIDKQHCSSTTSETK 114
           VI ++   +   S +TS+TK
Sbjct: 573 VISSSEKIESGTSISTSDTK 592


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 356 PEESKQIKLLKTVVALPSTITRRDVIRPSTTLQ 258
           PEES    L K + ALP++   R +++P+  LQ
Sbjct: 419 PEESPMTFLQKKMAALPTSSPVRPMLKPTLQLQ 451


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 508 PVTEGKVADSARVNINDNVNMTISVVYVMTRF--C-SVLVRRLDLIS 639
           P T   + ++A +N ND   +     Y ++RF  C +VL+R LDL++
Sbjct: 481 PSTLSSILEAACLNNNDKFAIAFVRKYTLSRFSDCHAVLLRYLDLLA 527


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 219 YINSKRQRDCKTKRSRHPHNNHRQTTLQ 136
           Y NS    D     S+HPH   R +TL+
Sbjct: 141 YTNSSTNPDVLYMSSQHPHTQQRYSTLK 168


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 201 QRDCKTKRSRHPHNNHRQTTLQLNDERDQT 112
           + + K  R  HPH  H++   +L+DE  +T
Sbjct: 314 KENSKRLRKLHPHITHKELMKKLSDEYHRT 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,603
Number of Sequences: 5004
Number of extensions: 46499
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)