Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30736
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.72 
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    28   1.7  
SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    28   1.7  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   2.9  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   8.8  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   8.8  

>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +1

Query: 262 VLMVPTVVLQELDNLKREQST-----ARKAIRWLELQLKNGSRFLRAQRPNQ 402
           V+++P  VLQELD LK E S+     AR+A  +L    ++    LR Q+ ++
Sbjct: 98  VVVLPWTVLQELDGLKSESSSTCGYLARQAHNFLLQCFRSNVSSLRGQKVHE 149


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 301 NLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINN 459
           N+   + T  K   +   +L +GSR  R  RP+++  L   KY R  P   +N
Sbjct: 527 NIGSLRQTKFKQSNYTPPELNDGSRQHRPSRPSKNPSLKKKKYVRTKPKKASN 579


>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 229 SCQTAPTHNNFVLMVPTVVLQELD--NLKREQSTARKAIRWLELQLKNGSR 375
           +CQT   +NNFV  +  ++L  L+  NLK  Q +  K +   E Q K  S+
Sbjct: 166 NCQTTAEYNNFVQDLIPLLLTGLNATNLKAVQKSVNKLVVNKEQQEKTQSK 216


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 489 MIAELQNLNKVINMGWSFAGIFQERQG 409
           ++ E+Q++  + N  W ++GIF +  G
Sbjct: 88  LVVEIQDVQPLENQPWGYSGIFAKENG 114


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 244  PTHNNFVLMVPTVVLQEL 297
            PTH+NF  ++P ++L E+
Sbjct: 1038 PTHHNFFSIIPFILLTEI 1055


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 547 GSLRPSLYYSLAMLMKMKNSIKNLVLWAQAIG 642
           GSL P +    A L   K+S +N++L + AIG
Sbjct: 368 GSLPPEVRNQQASLFNSKSSDENILLASDAIG 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,236
Number of Sequences: 5004
Number of extensions: 52740
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)