Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30736
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0026 + 219663-220843,222201-222447,222574-224535                 31   1.3  
11_01_0026 + 193383-194566,195726-195972,196099-198063                 31   1.3  
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216...    30   1.7  
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777...    29   4.0  

>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 201 SSTSNAGAADCPLRSNSRTCDVNHSRPRRRSNPLSF 94
           S++S++GAAD P  SNS    +  S+  +R NP +F
Sbjct: 89  SASSSSGAADEPPVSNSLMAAIKRSQANQRRNPDTF 124


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 201 SSTSNAGAADCPLRSNSRTCDVNHSRPRRRSNPLSF 94
           +S+S++GAAD P  SNS    +  S+  +R NP +F
Sbjct: 90  ASSSSSGAADEPPVSNSLMAAIKRSQANQRRNPDTF 125


>01_07_0370 -
           43119049-43120278,43121376-43121420,43121421-43121662,
           43121908-43122686,43123123-43123463,43123565-43123785,
           43123866-43124176,43124257-43124516,43124836-43124918,
           43124940-43125036,43125132-43125305,43126215-43126592
          Length = 1386

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 226 PSCQTAPTHNNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQS 405
           P+ Q+ P+       +PTV  +   ++KR+ S   K     ++ +    +      P +S
Sbjct: 682 PNIQSPPSEQMAETRLPTVASERAPSIKRQDSFEMKLPDLPKIDVPLHRQSSNTSDP-ES 740

Query: 406 KPLPLL-KYPRKAPAHINNFIQILEFCNHFVAEDKRRK 516
              PLL   P+   +H   F + L+  ++F AE+ +++
Sbjct: 741 PISPLLTSDPKNERSHSKTFSRPLDMFDNFHAEESKKQ 778


>01_06_0295 +
           28276505-28276576,28276682-28276888,28277492-28277740,
           28277928-28278080,28278158-28278313,28278411-28278570,
           28278664-28278815,28278906-28278993,28279111-28279223,
           28279271-28279345,28279435-28279669,28279760-28280148
          Length = 682

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +1

Query: 283 VLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNF 462
           V QE +  K+ Q   +K    L+ QLK     L   +P+ SKPL   K PR +    N  
Sbjct: 463 VRQEKEQEKKRQRDQKK----LQDQLKAEQEALYGSKPSPSKPLSTKKAPRHSMGGANRR 518

Query: 463 IQI 471
           + +
Sbjct: 519 LSL 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,553,182
Number of Sequences: 37544
Number of extensions: 351861
Number of successful extensions: 911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)