Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30736
(755 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038296-1|AAH38296.1| 1016|Homo sapiens Smg-5 homolog, nonsense... 51 5e-06
BC007453-1|AAH07453.2| 548|Homo sapiens SMG5 protein protein. 51 5e-06
AY336728-1|AAQ84301.1| 1016|Homo sapiens LPTS interacting protei... 51 5e-06
AY168922-1|AAO17582.1| 1016|Homo sapiens Est1p-like protein B pr... 51 5e-06
AL589685-2|CAI14160.1| 1016|Homo sapiens Smg-5 homolog, nonsense... 51 5e-06
AL135927-6|CAI15525.1| 1016|Homo sapiens Smg-5 homolog, nonsense... 51 5e-06
AB085691-1|BAC53623.1| 1016|Homo sapiens SMG-5 protein. 51 5e-06
AB029012-1|BAA83041.2| 1033|Homo sapiens KIAA1089 protein protein. 51 5e-06
AK027486-1|BAB55147.1| 285|Homo sapiens protein ( Homo sapiens ... 50 1e-05
AL135927-27|CAI15546.1| 137|Homo sapiens Smg-5 homolog, nonsens... 48 3e-05
BC030781-1|AAH30781.1| 900|Homo sapiens chromosome 1 open readi... 34 0.64
AL356273-3|CAI22095.1| 900|Homo sapiens chromosome 1 open readi... 34 0.64
AL136133-3|CAI17940.1| 900|Homo sapiens chromosome 1 open readi... 34 0.64
AF288392-1|AAG60612.1| 900|Homo sapiens C1orf26 protein. 33 1.5
AJ406636-1|CAC10700.1| 125|Homo sapiens immunoglobulin heavy ch... 31 3.4
AJ406629-1|CAC10693.1| 92|Homo sapiens immunoglobulin heavy ch... 31 3.4
>BC038296-1|AAH38296.1| 1016|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1016
Score = 50.8 bits (116), Expect = 5e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 PSCQTAPTHNNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQS 405
P + T F++++P V+ LD LK+E AR IR+LE + K G+R++R Q+
Sbjct: 869 PVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVG 927
Query: 406 KPLPLLKYPRKAPAHINNFIQILEFCNHF-VAEDKRRKDP 522
K K R+ A +IL+ C +A+ +DP
Sbjct: 928 KSFERHKLKRQ-DADAWTLYKILDSCKQLTLAQGAGEEDP 966
>BC007453-1|AAH07453.2| 548|Homo sapiens SMG5 protein protein.
Length = 548
Score = 50.8 bits (116), Expect = 5e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 PSCQTAPTHNNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQS 405
P + T F++++P V+ LD LK+E AR IR+LE + K G+R++R Q+
Sbjct: 401 PVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVG 459
Query: 406 KPLPLLKYPRKAPAHINNFIQILEFCNHF-VAEDKRRKDP 522
K K R+ A +IL+ C +A+ +DP
Sbjct: 460 KSFERHKLKRQ-DADAWTLYKILDSCKQLTLAQGAGEEDP 498
>AY336728-1|AAQ84301.1| 1016|Homo sapiens LPTS interacting protein
protein.
Length = 1016
Score = 50.8 bits (116), Expect = 5e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 PSCQTAPTHNNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQS 405
P + T F++++P V+ LD LK+E AR IR+LE + K G+R++R Q+
Sbjct: 869 PVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVG 927
Query: 406 KPLPLLKYPRKAPAHINNFIQILEFCNHF-VAEDKRRKDP 522
K K R+ A +IL+ C +A+ +DP
Sbjct: 928 KSFERHKLKRQ-DADAWTLYKILDSCKQLTLAQGAGEEDP 966
>AY168922-1|AAO17582.1| 1016|Homo sapiens Est1p-like protein B
protein.
Length = 1016
Score = 50.8 bits (116), Expect = 5e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 PSCQTAPTHNNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQS 405
P + T F++++P V+ LD LK+E AR IR+LE + K G+R++R Q+
Sbjct: 869 PVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVG 927
Query: 406 KPLPLLKYPRKAPAHINNFIQILEFCNHF-VAEDKRRKDP 522
K K R+ A +IL+ C +A+ +DP
Sbjct: 928 KSFERHKLKRQ-DADAWTLYKILDSCKQLTLAQGAGEEDP 966
>AL589685-2|CAI14160.1| 1016|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1016
Score = 50.8 bits (116), Expect = 5e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 PSCQTAPTHNNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQS 405
P + T F++++P V+ LD LK+E AR IR+LE + K G+R++R Q+
Sbjct: 869 PVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVG 927
Query: 406 KPLPLLKYPRKAPAHINNFIQILEFCNHF-VAEDKRRKDP 522
K K R+ A +IL+ C +A+ +DP
Sbjct: 928 KSFERHKLKRQ-DADAWTLYKILDSCKQLTLAQGAGEEDP 966
>AL135927-6|CAI15525.1| 1016|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1016
Score = 50.8 bits (116), Expect = 5e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 PSCQTAPTHNNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQS 405
P + T F++++P V+ LD LK+E AR IR+LE + K G+R++R Q+
Sbjct: 869 PVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVG 927
Query: 406 KPLPLLKYPRKAPAHINNFIQILEFCNHF-VAEDKRRKDP 522
K K R+ A +IL+ C +A+ +DP
Sbjct: 928 KSFERHKLKRQ-DADAWTLYKILDSCKQLTLAQGAGEEDP 966
>AB085691-1|BAC53623.1| 1016|Homo sapiens SMG-5 protein.
Length = 1016
Score = 50.8 bits (116), Expect = 5e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 PSCQTAPTHNNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQS 405
P + T F++++P V+ LD LK+E AR IR+LE + K G+R++R Q+
Sbjct: 869 PVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVG 927
Query: 406 KPLPLLKYPRKAPAHINNFIQILEFCNHF-VAEDKRRKDP 522
K K R+ A +IL+ C +A+ +DP
Sbjct: 928 KSFERHKLKRQ-DADAWTLYKILDSCKQLTLAQGAGEEDP 966
>AB029012-1|BAA83041.2| 1033|Homo sapiens KIAA1089 protein protein.
Length = 1033
Score = 50.8 bits (116), Expect = 5e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 PSCQTAPTHNNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQS 405
P + T F++++P V+ LD LK+E AR IR+LE + K G+R++R Q+
Sbjct: 886 PVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVG 944
Query: 406 KPLPLLKYPRKAPAHINNFIQILEFCNHF-VAEDKRRKDP 522
K K R+ A +IL+ C +A+ +DP
Sbjct: 945 KSFERHKLKRQ-DADAWTLYKILDSCKQLTLAQGAGEEDP 983
>AK027486-1|BAB55147.1| 285|Homo sapiens protein ( Homo sapiens
cDNA FLJ14580 fis, clone NT2RM4001204. ).
Length = 285
Score = 49.6 bits (113), Expect = 1e-05
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 PSCQTAPTHNNFVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQS 405
P + T F++++P ++ LD LK+E AR IR+LE + K G+R++R Q+
Sbjct: 138 PVIRQLATSGRFIVIIPRTMIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVG 196
Query: 406 KPLPLLKYPRKAPAHINNFIQILEFCNHF-VAEDKRRKDP 522
K K R+ A +IL+ C +A+ +DP
Sbjct: 197 KSFERHKLKRQ-DADAWTLYKILDSCKQLTLAQGAGEEDP 235
>AL135927-27|CAI15546.1| 137|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 137
Score = 48.4 bits (110), Expect = 3e-05
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +1
Query: 259 FVLMVPTVVLQELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRK 438
F++++P V+ LD LK+E AR IR+LE + K G+R++R Q+ K K R+
Sbjct: 1 FIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ 59
Query: 439 APAHINNFIQILEFCNHF-VAEDKRRKDP 522
A +IL+ C +A+ +DP
Sbjct: 60 -DADAWTLYKILDSCKQLTLAQGAGEEDP 87
>BC030781-1|AAH30781.1| 900|Homo sapiens chromosome 1 open reading
frame 26 protein.
Length = 900
Score = 33.9 bits (74), Expect = 0.64
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +1
Query: 244 PTHNNFVLMVPTVVLQELDN------LKREQSTARKAIRWLELQLKNGSRFLRAQ 390
P + VL++P VV+QELD LKR Q A A+ ++ LKN R L Q
Sbjct: 413 PGFDKLVLIIPWVVMQELDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQ 467
>AL356273-3|CAI22095.1| 900|Homo sapiens chromosome 1 open reading
frame 26 protein.
Length = 900
Score = 33.9 bits (74), Expect = 0.64
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +1
Query: 244 PTHNNFVLMVPTVVLQELDN------LKREQSTARKAIRWLELQLKNGSRFLRAQ 390
P + VL++P VV+QELD LKR Q A A+ ++ LKN R L Q
Sbjct: 413 PGFDKLVLIIPWVVMQELDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQ 467
>AL136133-3|CAI17940.1| 900|Homo sapiens chromosome 1 open reading
frame 26 protein.
Length = 900
Score = 33.9 bits (74), Expect = 0.64
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +1
Query: 244 PTHNNFVLMVPTVVLQELDN------LKREQSTARKAIRWLELQLKNGSRFLRAQ 390
P + VL++P VV+QELD LKR Q A A+ ++ LKN R L Q
Sbjct: 413 PGFDKLVLIIPWVVMQELDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQ 467
>AF288392-1|AAG60612.1| 900|Homo sapiens C1orf26 protein.
Length = 900
Score = 32.7 bits (71), Expect = 1.5
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +1
Query: 244 PTHNNFVLMVPTVVLQELDN------LKREQSTARKAIRWLELQLKNGSRFLRAQ 390
P + VL++P VV+QE+D LKR Q A A+ ++ LKN R L Q
Sbjct: 413 PGFDKLVLIIPWVVMQEVDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQ 467
>AJ406636-1|CAC10700.1| 125|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 125
Score = 31.5 bits (68), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 416 GRGFDWFGRCARRNLEPFFN*SSNQRIALRA 324
G+G DW G RR L P++N S R+++ A
Sbjct: 43 GKGLDWIGNVDRR-LRPYYNPSLKSRVSISA 72
>AJ406629-1|CAC10693.1| 92|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 92
Score = 31.5 bits (68), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 416 GRGFDWFGRCARRNLEPFFN*SSNQRIALRA 324
G+G DW G RR L P++N S R+++ A
Sbjct: 10 GKGLDWIGNVDRR-LRPYYNPSLKSRVSISA 39
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,715,488
Number of Sequences: 237096
Number of extensions: 1889194
Number of successful extensions: 4484
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4482
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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