Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30731
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 105 9e-24
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 105 9e-24
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 71 1e-13
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 55 1e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 46 8e-06
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 44 3e-05
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 42 1e-04
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.025
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 34 0.025
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.025
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.025
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.95
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.7
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 2.2
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 5.1
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce... 26 6.7
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 8.9
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.9
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 25 8.9
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 8.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 8.9
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 8.9
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 105 bits (251), Expect = 9e-24
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +1
Query: 49 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 228
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 229 KDEQDRCITL 258
DEQ+R +T+
Sbjct: 61 ADEQERGVTI 70
Score = 91.9 bits (218), Expect = 9e-20
Identities = 51/86 (59%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 IKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDG 431
IKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDG
Sbjct: 70 IKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDG 124
Query: 432 ALXXXXXXXXXXXQTETVLRQAIAER 509
AL QTETVLRQA+ ER
Sbjct: 125 ALVVVDTIEGVCVQTETVLRQALGER 150
Score = 87.8 bits (208), Expect = 1e-18
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = +2
Query: 509 IKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGS 688
I+P++ +NK+DR YQ F R+VE+VNV+I+TY D +G+ +V P KG+
Sbjct: 151 IRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGT 208
Query: 689 VGFGSGLHGWAFTLKQFSEMYADK 760
V F SGLHGWAFT++QF+ YA K
Sbjct: 209 VAFASGLHGWAFTVRQFANRYAKK 232
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 105 bits (251), Expect = 9e-24
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +1
Query: 49 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 228
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 229 KDEQDRCITL 258
DEQ+R +T+
Sbjct: 61 ADEQERGVTI 70
Score = 91.9 bits (218), Expect = 9e-20
Identities = 51/86 (59%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 IKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDG 431
IKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDG
Sbjct: 70 IKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDG 124
Query: 432 ALXXXXXXXXXXXQTETVLRQAIAER 509
AL QTETVLRQA+ ER
Sbjct: 125 ALVVVDTIEGVCVQTETVLRQALGER 150
Score = 87.8 bits (208), Expect = 1e-18
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = +2
Query: 509 IKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGS 688
I+P++ +NK+DR YQ F R+VE+VNV+I+TY D +G+ +V P KG+
Sbjct: 151 IRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGT 208
Query: 689 VGFGSGLHGWAFTLKQFSEMYADK 760
V F SGLHGWAFT++QF+ YA K
Sbjct: 209 VAFASGLHGWAFTVRQFANRYAKK 232
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 71.3 bits (167), Expect = 1e-13
Identities = 42/85 (49%), Positives = 56/85 (65%)
Frame = +3
Query: 255 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 434
+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+ DGA
Sbjct: 70 MKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCDGA 121
Query: 435 LXXXXXXXXXXXQTETVLRQAIAER 509
QT TVLRQA +R
Sbjct: 122 FVLVDAVEGVCSQTITVLRQAWIDR 146
Score = 66.5 bits (155), Expect = 4e-12
Identities = 30/64 (46%), Positives = 44/64 (68%)
Frame = +1
Query: 67 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 246
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 247 CITL 258
IT+
Sbjct: 67 GITM 70
Score = 52.0 bits (119), Expect = 9e-08
Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Frame = +2
Query: 509 IKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY----------NDDGGPMG 658
IK IL +NKMDR + R+VE VN +I T+ ND+
Sbjct: 147 IKVILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVIGTFYTGELMQLADNDEVISDE 206
Query: 659 EVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 760
+ P +G+V F S GWAF L QFSE Y K
Sbjct: 207 GIYFAPEQGNVVFASAYDGWAFCLDQFSEFYEKK 240
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/59 (47%), Positives = 35/59 (59%)
Frame = +3
Query: 318 NPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 494
N Q+ EK + IN+ID+PGH+DF+ EV ALRV DGA+ QT TV RQ
Sbjct: 134 NEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQ 192
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 55 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGII 186
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 45.6 bits (103), Expect = 8e-06
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +1
Query: 73 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 252
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGI 106
Query: 253 TL 258
T+
Sbjct: 107 TV 108
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 345 KGFLINLIDSPGHVDFSSEVTAALRVTDGAL 437
+ +L+NLID+PGHVDF +EV +L +G +
Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSLAACEGCI 152
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +3
Query: 357 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 497
INLID+PGH DF+ EV ++ V DGA+ QT+ V +QA
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQA 141
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 100 NIRNMSVIAHVDHGKSTLTDSLVSKAGI---IAGARAGETRFTDTRKDEQDRCITLN 261
+IRN+ +IAH+D GK+TLT+ ++ G G+T D E+ R IT+N
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDT-VMDYLPAERQRGITIN 82
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 41.9 bits (94), Expect = 1e-04
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +2
Query: 518 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGF 697
+L +NK+DR Y + +++ VN I + D + RV P G+V F
Sbjct: 265 VLVLNKVDRLILELRLPPNDAYHKLRHVIDEVNDNICQISKDL----KYRVSPELGNVCF 320
Query: 698 GSGLHGWAFTLKQFSEMYADK 760
S G+ FTL F+++Y D+
Sbjct: 321 ASCDLGYCFTLSSFAKLYIDR 341
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 345 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 500
K F ID+PGHVDF EV A + ++DG + T +++ AI
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAI 258
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.025
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 33.9 bits (74), Expect = 0.025
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 91 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLN 261
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R IT++
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITIS 105
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.025
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.025
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.95
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = -1
Query: 523 QNRLDRSAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPF 344
Q + S+++ ++ S + + +TTT +PS + S++ +S S+ S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 343 SLFSRWSGFVMNTKSFSSSSKNIEMAV 263
S S S ++ S SSSS + + +
Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSVPI 210
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 112 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 213
++++ HVDHGK+TL D+ K+ I + G T+
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQ 206
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/82 (19%), Positives = 40/82 (48%)
Frame = +1
Query: 103 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLNLRPSLCS 282
+++ I+H++ KS+ + V+ I + + G F+D ++ ++ PS S
Sbjct: 112 VKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATSANNPFSLSTDVNPSKPS 171
Query: 283 SSLKRKI*YSSQTLTSVKRVRK 348
S++ K ++++ S+ +K
Sbjct: 172 SNVFSKPSFAAKAQQSITDQQK 193
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSLVSKAGII 186
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 138
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -1
Query: 733 FEGESPPMKTRPETNRALARVDTH---LTHGTTIIVICGYNDV 614
+EGE P R ++ LA VD H L ++IV C Y+ V
Sbjct: 33 YEGERIPGSVRIPSDTFLASVDQHVDDLMKKRSLIVHCTYSQV 75
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 8.9
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Frame = +1
Query: 28 KNHKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII------- 186
K P+ +V+ V EI + K + ++ V HVD GKST+ ++ + G I
Sbjct: 155 KKQNPTDLVS--VPEIFEQSNPKPVV-HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQK 211
Query: 187 ---AGARAGETRFT-----DTRKDEQDRCITLNLRPSLCSSSLK 294
A +G+ F+ DT ++E+ R +T+++ + S K
Sbjct: 212 LHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -1
Query: 487 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 308
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 307 TKSFSSSSKN 278
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 349 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLM 254
P S +S W+ V+NTK SFS ++M +L+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELI 199
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 105 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 10
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 100 SASCPSSHGSRLP*NSPF*MVYDFCSIK 17
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 134 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 241
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,087
Number of Sequences: 5004
Number of extensions: 66583
Number of successful extensions: 238
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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