Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30725
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    29   0.32 
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   1.3  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   3.0  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.0  
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    25   5.2  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   6.9  
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    24   9.1  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    24   9.1  

>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 359 FCLTDCLICWLRLLFHRPILSC 294
           +CLT     WL +L+ RP L+C
Sbjct: 40  YCLTTLFFTWLIILYPRPTLAC 61


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -2

Query: 303 SVLSLAL-EWIHQYISLRFSSRKFRIYRGTIIILNL----NAYSASVQHFLA 163
           +VL L + EW  +Y+S   S     +Y G+I  LNL    N  S S +H +A
Sbjct: 469 TVLDLKIFEWFKEYLSQSLSVSLENVYPGSIPNLNLLLGENVASYSFKHGMA 520


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 260 HYDSLVGNSGFTGAPS 213
           H DS++GN G TGA S
Sbjct: 835 HRDSVIGNGGVTGANS 850


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 329 LRLLFHRPILSCL*LWNGFTN 267
           +++ F  PI+S L ++NGF N
Sbjct: 301 IKIFFSEPIVSSLGIYNGFVN 321


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 1   IYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE 138
           +YP Y +  +     R +PK   + NP  + I DV+   G +  +E
Sbjct: 6   LYPIYFDKSRP-RRFRCVPKDKAILNPLAKNIADVVRDLGYKCKLE 50


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 79  PTHQEIRDVLLATGLRVGVENKLYSRECSKEML 177
           PT Q ++DV L TG    V +++Y  E S   L
Sbjct: 521 PTFQSLKDVDLTTGRYDLVNSQMYVAESSTSEL 553


>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 292 RQDRIGLWNNNLNQQIRQSVRQKGKK 369
           R +R+G W + L++  + ++++K KK
Sbjct: 179 RDNRVGNWQDFLHKTKKNNLKKKNKK 204


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -3

Query: 395 LLYDTSSPSFFPFCLTDCLICWLRLLFHRPILSCL*LWNGFTNIFHYDSLVGNSGFTGAP 216
           LLY +++P      LT  L    RLLF+R   + L     F  ++   +  G S +   P
Sbjct: 292 LLYTSNTPIMLQSALTSNLFFASRLLFNRFSSNFL---VRFLGVWEQTATSGLSYYLSPP 348

Query: 215 SSF 207
           +SF
Sbjct: 349 ASF 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,565
Number of Sequences: 5004
Number of extensions: 36637
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)