Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30725
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0255 - 13522303-13522337,13524027-13524126,13524247-135244...    70   1e-12
02_02_0488 - 10863248-10863960,10865933-10866269                       28   3.9  
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910           27   5.1  
10_06_0042 - 10015657-10017840                                         27   5.1  
05_01_0137 + 917533-917814,918080-918352                               27   6.8  
02_01_0665 + 4944756-4945151,4946758-4947259,4947909-4947979,494...    27   6.8  

>06_02_0255 -
           13522303-13522337,13524027-13524126,13524247-13524468,
           13524608-13524695,13525507-13525562
          Length = 166

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   IYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE-NKLYSRECSKEML 177
           IYP YLNSKKT+AEGRR+       +PT  EI D      +   +E +K Y R    +  
Sbjct: 77  IYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR----DFF 132

Query: 178 YRGRIRVQIKNDDGAPVNPEFPTRES 255
             GR+RVQ+K DDG+PVNP   T  +
Sbjct: 133 QVGRVRVQLKKDDGSPVNPAIKTNST 158


>02_02_0488 - 10863248-10863960,10865933-10866269
          Length = 349

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 273 HQYISLRFSSRKFRIYRGTIIILNLNAYSASVQHFLA---AFS*IQFVF 136
           HQ ++LR S+ +  +YR +II      Y+ S +HF      +  + FVF
Sbjct: 135 HQAVALRVSADRAAVYRCSIIGYQDTLYAHSNRHFYRDCDVYGTVDFVF 183


>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
          Length = 1155

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 276 IHQYISLRFSSRKFRIYRGTIIILNLNAYSASVQHFL 166
           IH   +L+F     RIY G  +   LN  S S+ HF+
Sbjct: 698 IHNIDNLKFLHADTRIYLGKSMFCLLNESSVSLPHFV 734


>10_06_0042 - 10015657-10017840
          Length = 727

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 16  LNSKKTLAEGRRLPKSVCVENPTHQEIRDVLL 111
           L  + T AE RRL +S    +PTH + + +LL
Sbjct: 591 LRYRDTRAEARRLFRSAAAWDPTHHDAQRMLL 622


>05_01_0137 + 917533-917814,918080-918352
          Length = 184

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 245 LENRNEIYW*IHSKAKDKTESACGTTTSTNKS 340
           +E +N  YW  + KA+D+  +A  + + T  S
Sbjct: 27  IEGKNVFYWFQNHKARDRQNAAAASASPTTSS 58


>02_01_0665 +
           4944756-4945151,4946758-4947259,4947909-4947979,
           4948039-4948239
          Length = 389

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 325 GCCSTGRFCLVFSFGMDSPI 266
           GCC+TGRF + F    +SP+
Sbjct: 332 GCCATGRFEMGFMCNDESPL 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,817,794
Number of Sequences: 37544
Number of extensions: 214170
Number of successful extensions: 487
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)