Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30725
         (445 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089689-1|AAL90427.1|  160|Drosophila melanogaster RH65975p pro...   110   7e-25
AE014296-1238|AAF50575.1|  160|Drosophila melanogaster CG4457-PA...   110   7e-25
U35682-1|AAA79181.1|  163|Drosophila melanogaster signal recogni...   107   7e-24
BT015261-1|AAT94490.1| 1411|Drosophila melanogaster LD39963p pro...    28   6.6  
AE014134-2036|AAF53075.1| 1411|Drosophila melanogaster CG4738-PA...    28   6.6  

>AY089689-1|AAL90427.1|  160|Drosophila melanogaster RH65975p
           protein.
          Length = 160

 Score =  110 bits (265), Expect = 7e-25
 Identities = 52/85 (61%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   IYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVENKLYSRECSKEMLY 180
           IYPAY+N KKT  EGRRLPK  CV+NP++ EIRDVL  + L+  +ENK Y RE S EM +
Sbjct: 26  IYPAYINRKKTRQEGRRLPKENCVDNPSYIEIRDVLSVSNLQFLMENKKYCRENSSEMEF 85

Query: 181 RGRIRVQIKNDDGAPVNPEFPTRES 255
           RGR+RVQ++N DG   N +FPTRES
Sbjct: 86  RGRVRVQLRNVDGTLYNNDFPTRES 110



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 255 VMKYIGESIPKLKTRQNR---PVEQQPQP 332
           +M +I   IP+LKTRQN+      QQ QP
Sbjct: 111 IMLHIASKIPQLKTRQNKSGDSYHQQSQP 139


>AE014296-1238|AAF50575.1|  160|Drosophila melanogaster CG4457-PA
           protein.
          Length = 160

 Score =  110 bits (265), Expect = 7e-25
 Identities = 52/85 (61%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   IYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVENKLYSRECSKEMLY 180
           IYPAY+N KKT  EGRRLPK  CV+NP++ EIRDVL  + L+  +ENK Y RE S EM +
Sbjct: 26  IYPAYINRKKTRQEGRRLPKENCVDNPSYIEIRDVLSVSNLQFLMENKKYCRENSSEMEF 85

Query: 181 RGRIRVQIKNDDGAPVNPEFPTRES 255
           RGR+RVQ++N DG   N +FPTRES
Sbjct: 86  RGRVRVQLRNVDGTLYNNDFPTRES 110



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 255 VMKYIGESIPKLKTRQNR---PVEQQPQP 332
           +M +I   IP+LKTRQN+      QQ QP
Sbjct: 111 IMLHIASKIPQLKTRQNKSGDSYHQQSQP 139


>U35682-1|AAA79181.1|  163|Drosophila melanogaster signal
           recognition particle 19kDa protein protein.
          Length = 163

 Score =  107 bits (257), Expect = 7e-24
 Identities = 50/85 (58%), Positives = 63/85 (74%)
 Frame = +1

Query: 1   IYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVENKLYSRECSKEMLY 180
           IYPAY+N KKT  EGRRLPK  CV+NP++ EIRD +  + L+  +ENK Y RE S EM +
Sbjct: 29  IYPAYINRKKTRQEGRRLPKENCVDNPSYIEIRDAVSVSNLQFLMENKKYCRENSSEMEF 88

Query: 181 RGRIRVQIKNDDGAPVNPEFPTRES 255
           RGR+RVQ++N DG   N +FPTRES
Sbjct: 89  RGRVRVQLRNVDGTLYNIDFPTRES 113



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 255 VMKYIGESIPKLKTRQNR---PVEQQPQP 332
           +M +I   IP+LKTRQN+      QQ QP
Sbjct: 114 IMLHIASKIPQLKTRQNKSGDSYHQQSQP 142


>BT015261-1|AAT94490.1| 1411|Drosophila melanogaster LD39963p
           protein.
          Length = 1411

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = +1

Query: 100 DVLLATGLRVGVENKLYSRECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRE 252
           D L++  +++ ++ +LY RE   E++ +   R+ + +D+G P+ P    R+
Sbjct: 569 DKLISEDIKIELDKQLYQRESPVEVISKLVARISMIDDNG-PILPSNCVRQ 618


>AE014134-2036|AAF53075.1| 1411|Drosophila melanogaster CG4738-PA
           protein.
          Length = 1411

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = +1

Query: 100 DVLLATGLRVGVENKLYSRECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRE 252
           D L++  +++ ++ +LY RE   E++ +   R+ + +D+G P+ P    R+
Sbjct: 569 DKLISEDIKIELDKQLYQRESPVEVISKLVARISMIDDNG-PILPSNCVRQ 618


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,875,976
Number of Sequences: 53049
Number of extensions: 391339
Number of successful extensions: 1229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1438687674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)