Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30725
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.1  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 118 GLRVGVENKLYSRECSKEML----YRGRIRVQIKNDDGAPVNPEFPTR 249
           G R    +K++     +E L    +RGR  V   +++G+P +PE  +R
Sbjct: 284 GFRTTKSSKMFGSRFDEERLTLRIHRGRGSVHNGSNNGSPRSPESNSR 331


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 257 NEIYW*IHSKAKDKTESACGTTTSTNKSGNQ 349
           N  YW   +K K K + +      ++KSG++
Sbjct: 326 NYTYWGARAKKKSKKKESDDKKVISSKSGSK 356


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 297  RQNRPVEQQPQPTNQ 341
            +  +P +QQPQP  Q
Sbjct: 1520 QSQQPQQQQPQPQQQ 1534



 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 229 LQGHHHH 209
           LQ HHHH
Sbjct: 144 LQNHHHH 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,239
Number of Sequences: 438
Number of extensions: 2842
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)