Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30723
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   131   5e-32
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    26   3.7  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   4.9  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   6.5  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   6.5  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.5  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   8.5  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  131 bits (317), Expect = 5e-32
 Identities = 61/86 (70%), Positives = 74/86 (86%)
 Frame = +1

Query: 247 QGCLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMXLNLEPDNVGVVVFGNDKL 426
           Q  + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGM LNLE D VG V+FGND+L
Sbjct: 50  QAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRL 109

Query: 427 IKEGDIVKRTGAIVDVPVGEQILGRV 504
           ++EG++VKRT  IVDVPVGE +LGRV
Sbjct: 110 VREGEVVKRTRHIVDVPVGEALLGRV 135


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 400 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRV 504
           + + G + L++ G  V  TG+ + +PVG   LGR+
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRI 141


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 162 HLANYMSQPPTKLPRSPPSSKRGSLEP 242
           H  +Y+S P      SPP+SK  S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 150 QWPWHLANYMSQPPTKLPRSPPSSK 224
           Q P H  N+ S PP   P SP SSK
Sbjct: 687 QAPEHARNF-SSPPFTRPASPSSSK 710


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 112 RQAPGYRASNXSGDQRHFSQTYNCGRRKASYSARDS 5
           +Q   +++     DQ   ++ YN   R  ++SARDS
Sbjct: 378 QQYKAWKSQPKDRDQNQGNRAYNPPNRNQAFSARDS 413


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 141 RCPQWPWHLANYMSQPPTKLPRSPPSSKR 227
           R P+ P    +   QPP+  P +PP+ +R
Sbjct: 56  RLPRKPLPFRSTSLQPPSSQPPAPPTHQR 84


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 292 HHQCSRHDQSLLDSLGRGSKDPLFEDGGDLGSFV 191
           H Q + +D SL+   GRG +    ED  D G F+
Sbjct: 426 HSQGTLNDPSLVGIGGRGQEYHAEEDSDDEGEFM 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,081
Number of Sequences: 5004
Number of extensions: 37387
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)