Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30723
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0296 + 13888946-13889207,13889567-13889616 30 1.2
06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105... 30 1.2
12_01_0899 - 8689125-8689383,8689540-8689826 29 1.6
02_01_0688 + 5131555-5132334 29 1.6
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 28 3.7
08_02_0361 - 16205476-16205727 28 4.9
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 28 4.9
04_01_0319 - 4291144-4293402 28 4.9
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353... 28 4.9
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 28 4.9
01_01_1195 - 9567023-9567789,9567871-9568120 28 4.9
12_02_0305 - 17235832-17236379,17237345-17237444 27 6.5
07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188... 27 6.5
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 27 6.5
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 27 6.5
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 27 6.5
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133... 27 8.6
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234 27 8.6
03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639... 27 8.6
03_02_0158 - 6020682-6020796,6021112-6021329,6021548-6021589,602... 27 8.6
02_04_0275 - 21469391-21470650 27 8.6
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471... 27 8.6
>06_02_0296 + 13888946-13889207,13889567-13889616
Length = 103
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 237 EPRPRLSRRDWSCLEHW*WYRSCLWLEEHPG*GDGGVLLRSQGNG 371
E R L RR W + RS L L +P GDGG + R +G G
Sbjct: 34 EQRQWLDRRGWPAMRRRAGGRSTLPLPSNPV-GDGGSMTRKKGGG 77
>06_01_0138 -
1051408-1051625,1052790-1052889,1053724-1054085,
1055055-1055079
Length = 234
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 217 PRREDPWSRAQGCLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMXL 375
P + PW R Q + +GDG+ ++ G+ + ++VE S M L
Sbjct: 69 PSKRPPWQRPQPPSQRDAPATDVGDGLTKLRGVDDGGYMDVVELSMAWTQMWL 121
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 129 CQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEPRPRL 254
C R P+ PW +A +PP PP+ G+ RP L
Sbjct: 40 CARLLLPEPPWGMAALPPEPPWGAAAHPPAPHWGAGPSRPAL 81
>02_01_0688 + 5131555-5132334
Length = 259
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 159 WHLANYMSQPPTKLPRSPPSSKRGSLEPRPRLSRRDWSCLE 281
+HLA PP P PP + G+ PR + DW C E
Sbjct: 153 FHLACVRVWPPLMPPPPPPPAPPGARRPR-ATANEDWICPE 192
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 403 PHPHCQVPS*GPFP*DLRRTPPSPQPGCSSSHKHERY--HHQCS 278
PH Q P P P PP +P S+SH H R+ HH S
Sbjct: 110 PHHQQQGPGASPSP---PPPPPRGRPSFSASHSHHRHGGHHHRS 150
>08_02_0361 - 16205476-16205727
Length = 83
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 245 ARLQGSSLRGWWRSRQLCGWL 183
A L G + WWR R GWL
Sbjct: 12 ASLGGGGVELWWRRRSAAGWL 32
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 138 WRCPQWPWHLANYMSQPPTKLPRSPPSSKRG 230
WR P + + QP K P SPP SK+G
Sbjct: 641 WRTPVKSPVPSMKLEQPAQKKPSSPPKSKKG 671
>04_01_0319 - 4291144-4293402
Length = 752
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Frame = -2
Query: 242 RLQGSSLRGWWRSRQL-----CGWLRH-VVC 168
R SS G+W R+L CGW+RH V+C
Sbjct: 339 RALASSWTGFWLDRELRPVWGCGWIRHEVLC 369
>01_07_0064 +
40834649-40834786,40834934-40834997,40835333-40835391,
40835602-40835677,40835775-40835846,40837641-40837728,
40838239-40838497,40838766-40839000,40839447-40839470,
40839910-40839997,40840110-40840300,40841082-40841322,
40841803-40842556
Length = 762
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -3
Query: 289 HQCSRHDQSLLDSLGRGSKDPLFEDGGDLG 200
H CSRHD L D L R + DGG LG
Sbjct: 527 HTCSRHDADLQDCLRRWNA----ADGGGLG 552
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 27.9 bits (59), Expect = 4.9
Identities = 23/75 (30%), Positives = 30/75 (40%)
Frame = -3
Query: 409 ILPHPHCQVPS*GPFP*DLRRTPPSPQPGCSSSHKHERYHHQCSRHDQSLLDSLGRGSKD 230
+L H C+ S P P D +RT P P P C + + +L SL S D
Sbjct: 166 VLEHHPCENFSFFPPPIDRKRTGPRPCPVCYVPVEQALALMPGAPSASPVLRSLNYLSGD 225
Query: 229 PLFEDGGDLGSFVGG 185
L + GS GG
Sbjct: 226 NLISKESNHGSLFGG 240
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 343 PPSPQPGCSSSHKHERYHHQCS 278
PP PQP + H H RY Q S
Sbjct: 176 PPPPQPVVALHHHHHRYSQQYS 197
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 180 SQPPTKLPRSPPSSKRGSLEPR 245
SQPPT P PP+ GS PR
Sbjct: 114 SQPPTIAPTQPPTPSGGSQCPR 135
>07_01_0252 +
1883709-1885306,1886338-1886466,1887319-1887341,
1887455-1888023
Length = 772
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -2
Query: 302 RAIPSPMLKTRPVSSRQPWARLQGSSLRGWWRSRQLCG 189
RA+ +P LK ++SR ARL+ SS R W+S L G
Sbjct: 681 RALENP-LKILRMASRSNSARLRSSSSRSSWQSAFLQG 717
>06_01_0916 +
7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 186 PPTKLPRSPPSSKRGSLEPRPRLSRRDW 269
PP +P S S++GSLEP + + ++
Sbjct: 511 PPQNMPSSSAKSRKGSLEPISEVEKHNF 538
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 370 PFP*DLRRTPPSPQPGCSSSHKHERYHHQCSRHDQSLLDSLGRGSKDPLFEDG 212
P P RR P+P P SS R + +S S GR S P + DG
Sbjct: 45 PLPPRKRRLSPTPSPTRRSSRSRSRSPRRGRSRSRSRSRSRGR-SASPRYPDG 96
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 126 RCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKR 227
R + WR P LA + QP K P S P SK+
Sbjct: 414 RNRYWRTPVKSPVLAKKLEQPAQKRPSSAPKSKK 447
>12_01_0180 -
1335825-1335980,1336584-1336670,1336767-1336859,
1336985-1337057,1337153-1337247,1337917-1338004,
1338135-1338424
Length = 293
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 174 YMSQPPTKLPRSPP--SSKRGSLEPRP 248
+ S PPT P +PP S+R +L PRP
Sbjct: 13 HRSTPPTPRPTAPPLLHSRRLALPPRP 39
>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
Length = 856
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 426 KLVITKYYHTHIVRFQVKXHSLET*GELHHLLSLDVLQAINTSDTITNAQDTTSLF 259
K +TK + I ++K +ET G+L LLSL++ + + +T Q T LF
Sbjct: 680 KPYLTKMAYLSINLREIKKEDMETLGDLPALLSLEIWLEPDPKEQLT-VQSTGFLF 734
>03_05_0916 -
28762214-28762414,28763144-28763242,28763573-28763998,
28764259-28764501,28764706-28764927,28765392-28765721,
28767380-28767800,28768292-28768404,28769224-28769367,
28769439-28769570,28769802-28770013,28770983-28771505
Length = 1021
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 373 LNLEPDNVGVVVFGNDKLIKEGDIV 447
L L DN+GV V N KLI++G I+
Sbjct: 241 LLLGKDNIGVFVDQNGKLIQDGRII 265
>03_02_0158 -
6020682-6020796,6021112-6021329,6021548-6021589,
6021680-6021721,6021929-6022028,6022149-6022210,
6022981-6023052
Length = 216
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 307 KHERYHHQCSRHDQSLLDSLGRGSKD 230
K +RYHH + H Q+ +D L + D
Sbjct: 176 KMQRYHHPHAHHHQAYMDHLSNEAAD 201
>02_04_0275 - 21469391-21470650
Length = 419
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 352 RRTPPSPQPGCSSSHKHERYHHQCSRH 272
RRT + G SS+H H RY Q SRH
Sbjct: 347 RRTAMATDVGTSSNH-HVRYRFQDSRH 372
>02_01_0627 +
4708648-4708836,4708975-4709064,4709579-4709664,
4710108-4710332,4711251-4711314,4711793-4712491,
4712657-4712764,4712920-4713051,4713183-4713359,
4713920-4713973,4714072-4714134,4714227-4714928,
4715048-4715175,4715563-4715839
Length = 997
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 153 WPWHLANYMSQPPTKLPRSP 212
WP H NY+S+ T PRSP
Sbjct: 675 WPEHCKNYLSRILTLGPRSP 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,912
Number of Sequences: 37544
Number of extensions: 324405
Number of successful extensions: 1429
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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