Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30718
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 30 0.13
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 26 2.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 2.7
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 3.6
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 4.8
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 6.3
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 25 6.3
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 24 8.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 8.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 24 8.4
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 30.3 bits (65), Expect = 0.13
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 11 DAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLEN 166
D +ELS+EE +AL + S +E AEE++ +EE + D + + +N
Sbjct: 62 DELELSDEELVAL--ESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDN 111
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 2.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 127 YFSIFLRNIHALFSLGCFLLHAHLHCKRNLL 35
Y+ +++ N+ +L LG LL HL+ NL+
Sbjct: 11 YYELYMFNMESLRLLGGTLLETHLNGTHNLM 41
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 2.7
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 20 ELSEEEQIALAMQMSMQQ 73
EL+E+EQI LAM++S+ +
Sbjct: 644 ELNEQEQIELAMRLSLME 661
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 173 PEGSPAHSVKMLDHSLLQHIPQKHPCS 93
P +H K++ H LLQH P K P S
Sbjct: 885 PFSRASHEFKVI-HCLLQHDPTKRPSS 910
>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 4.8
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 11 DAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENL 169
+ ++ +EEQI +++ EA + S+ V +EY++ D L++ LE++
Sbjct: 5 ELQKIIQEEQIRCEREIAEAAEARNSSNSLIVVDEYSKESED--VLENGLEHV 55
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 24.6 bits (51), Expect = 6.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 101 DVSEEYAEVMN-DPAFLQSVLENLPGVDPQSEAIRN 205
D++ A +N DP +LQ + +LP P+S IRN
Sbjct: 854 DMARAVANKLNVDPNYLQFTMAHLPSRTPRS-VIRN 888
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 179 LLPEGSPAHSVKMLDHSLLQHIPQKHPCSL 90
L PE P S + S+ H P KHP S+
Sbjct: 148 LTPENIPEGSWFCVTCSIKSHHPPKHPLSI 177
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 24.2 bits (50), Expect = 8.4
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 11 DAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGVDPQS 190
DA +E I + M ++ +E D + E A+ + +L+ L V+P
Sbjct: 27 DANVTLYQEAILRMLNMGQRRLIVNIDELRDYNRELADGV--------LLKPLEYVEPFD 78
Query: 191 EAIRNAMSTI 220
EA+RN +ST+
Sbjct: 79 EALRNVVSTL 88
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 8.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 201 LMASLCGSTPGRFSSTLCKNAGSFITSAYSSETSMLSSA 85
L ASL +P +ST C S T + TS SSA
Sbjct: 60 LNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSA 98
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.2 bits (50), Expect = 8.4
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 191 HSVGLLPEGSPAHSVKMLDHSLLQHIPQKH 102
H V L SPAH + HS P H
Sbjct: 255 HKVKRLSVRSPAHPIYQTQHSHYDETPTSH 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,050
Number of Sequences: 5004
Number of extensions: 25520
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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