Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30718
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.80 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 56  QMSMQQEAPQAEESMDVSEEYAEVMNDPA 142
           Q   QQ+  Q ++    S +Y  V N PA
Sbjct: 796 QQQQQQQQQQQQQQQQSSSDYLMVGNSPA 824


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 387 YLFKFIGISTLSCSNVEAYKHVSIQKKMKK*INLILFR 274
           YLF  +GI   +CS+VE   +   + K K  +  IL R
Sbjct: 407 YLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILER 444


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 185 VGLLPEGSPAHS 150
           +GL+P GS  HS
Sbjct: 376 LGLMPSGSSVHS 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,675
Number of Sequences: 438
Number of extensions: 2098
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)