Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30716
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen...    75   7e-15
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   3.3  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    27   3.3  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    25   7.7  

>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
           component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
 Frame = +2

Query: 254 VSVQEIEERVLKVCKAYDKLS-ASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPD 430
           V+  + E+R+LKV  ++DK+    ++T  S F NDLGLDSLD VEV+MA+E+EF  +IPD
Sbjct: 30  VARPDAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPD 89

Query: 431 GDAERLVRPKDIVQYI 478
            DA+ +    D + YI
Sbjct: 90  KDADEITSVGDAISYI 105


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 44  NGCCEYFPKCFRW 82
           NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 478 NVLDNVFWSNQSLCIT--IRYLKSKFIFHCH 392
           N LDNVF S + L  +  + YL+ +F FHC+
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +2

Query: 224 TSVLDRRAV*VSVQEIEERVLKVCKAYDKLSASQLTVDSHFMND 355
           T  +DRR    ++Q+I  R+LK+ +  D++  ++  + +HF  +
Sbjct: 12  TYSIDRRKDGYTIQKIT-RILKLAECIDEMHIAKHEIRAHFQEE 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,913
Number of Sequences: 5004
Number of extensions: 52385
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)