Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30715
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411     32   0.37 
08_01_0351 + 3095639-3095995,3096134-3096187,3096407-3096490,309...    32   0.49 
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516...    28   6.1  
04_04_1586 - 34621945-34623366                                         28   6.1  
06_01_0092 - 775290-775691                                             28   8.0  
03_06_0097 - 31632238-31632525,31633386-31633769                       28   8.0  

>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
          Length = 229

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -3

Query: 638 VVTRSVTLHLPRPSARSFRFLPFLSRHVRRLSPSSSKSGAP 516
           V    V + L R SA   R+ PFLSR  +R S  S+ SG P
Sbjct: 180 VAASDVDVILLRRSATDGRYAPFLSRQPQRSSAGSTHSGKP 220


>08_01_0351 +
           3095639-3095995,3096134-3096187,3096407-3096490,
           3096972-3097097,3097174-3097241,3097324-3097393,
           3097597-3097662,3098404-3098454
          Length = 291

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -3

Query: 686 VPPDAPCSGALSAAGVVVTR---SVTLHLPRPSARSFRFLPFLSRHVRRLSPSSSKSGA 519
           +PP AP + A +AA     R   + T  +PR  A +    P+  RH+   S SSS + A
Sbjct: 25  LPPPAPATAAAAAAQAAALRFGSAATTRVPRALALTASTCPWHRRHLCSSSSSSSSAAA 83


>07_01_0684 -
           5161218-5161427,5161509-5161616,5162217-5162390,
           5162515-5162643,5162722-5163009,5163114-5163346,
           5164235-5165060
          Length = 655

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 674 APCSGALSAAGVVVTRSVTLHLPRPSARSFRF 579
           AP S A +AAG +   S  L LPRP+A +  F
Sbjct: 81  APASAAAAAAGALPIFSSLLLLPRPNATATPF 112


>04_04_1586 - 34621945-34623366
          Length = 473

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 427 YQGDGPLREPSP*SSFLGSRCRKALNRTLKG 519
           Y    PL +P+  SSF G  C  A+ RTL G
Sbjct: 165 YAQTDPLFDPAASSSFSGVSCGSAICRTLSG 195


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -2

Query: 177 RASSLLRQLAKGGCAARR 124
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>03_06_0097 - 31632238-31632525,31633386-31633769
          Length = 223

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -3

Query: 614 HLPRPSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVRFSALRHLDP 477
           HL  PS   F  LP L  H+R  S SSS+  A   +  SA    +P
Sbjct: 11  HLSLPSTSKFHPLPLL--HLRFPSSSSSRRAARLALAASAAEAAEP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,338,103
Number of Sequences: 37544
Number of extensions: 366547
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)