Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30712
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 174 1e-44
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 1e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 4e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 95 9e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 2e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 3e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 4e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 50 5e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 4e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 38 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.097
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.39
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.52
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 2.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.6
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.8
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 4.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 174 bits (423), Expect = 1e-44
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +1
Query: 256 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 435
TLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FE
Sbjct: 66 TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFE 125
Query: 436 TFNTPAMYVAIQAVLSLYASGRTT 507
TFN PA YVAIQAVLSLYASGRTT
Sbjct: 126 TFNAPAFYVAIQAVLSLYASGRTT 149
Score = 136 bits (329), Expect = 3e-33
Identities = 64/71 (90%), Positives = 68/71 (95%)
Frame = +3
Query: 510 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 689
IVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVR
Sbjct: 151 IVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVR 210
Query: 690 DIKEKLC*VVL 722
DIKEKLC V L
Sbjct: 211 DIKEKLCYVAL 221
Score = 130 bits (315), Expect = 2e-31
Identities = 58/63 (92%), Positives = 62/63 (98%)
Frame = +2
Query: 65 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 244
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 245 RGI 253
RGI
Sbjct: 62 RGI 64
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (241), Expect = 1e-22
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1
Query: 256 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 435
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 436 TFNTPAMYVAIQAVLSLYAS 495
+FN +Y+A+QAVL+L AS
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168
Score = 56.8 bits (131), Expect = 3e-09
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +3
Query: 495 RSYHRIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTT 668
RS V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S T
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKT 236
Query: 669 AEREIVRDIKEKLC 710
AER IKE+ C
Sbjct: 237 AER-----IKEECC 245
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 232
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 99.5 bits (237), Expect = 4e-22
Identities = 41/80 (51%), Positives = 61/80 (76%)
Frame = +1
Query: 259 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 438
+KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE
Sbjct: 67 VKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFER 126
Query: 439 FNTPAMYVAIQAVLSLYASG 498
+ +YVAIQAVLSLYA G
Sbjct: 127 YGFGGVYVAIQAVLSLYAQG 146
Score = 88.6 bits (210), Expect = 8e-19
Identities = 38/67 (56%), Positives = 51/67 (76%)
Frame = +3
Query: 510 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 689
+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR
Sbjct: 151 VVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVR 210
Query: 690 DIKEKLC 710
++KEKLC
Sbjct: 211 EMKEKLC 217
Score = 56.4 bits (130), Expect = 4e-09
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +2
Query: 71 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 244
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 245 RGI 253
R +
Sbjct: 62 RSL 64
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 95.1 bits (226), Expect = 9e-21
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 LKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 435
++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +E
Sbjct: 71 IQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYE 130
Query: 436 TFNTPAMYVAIQAVLSLYASGRTT 507
T N PA+ ++Q VL+LYAS RTT
Sbjct: 131 TLNVPALSFSLQPVLALYASARTT 154
Score = 83.8 bits (198), Expect = 2e-17
Identities = 35/67 (52%), Positives = 53/67 (79%)
Frame = +3
Query: 510 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 689
IVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR
Sbjct: 156 IVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVR 215
Query: 690 DIKEKLC 710
+IKEK C
Sbjct: 216 EIKEKCC 222
Score = 74.5 bits (175), Expect = 1e-14
Identities = 33/63 (52%), Positives = 43/63 (68%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIRPS 262
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 263 NTP 271
P
Sbjct: 72 QRP 74
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +1
Query: 259 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 438
+K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MFE+
Sbjct: 65 IKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFES 124
Query: 439 FNTPAMYVAIQAVLSLYASGRTT 507
PA Y+A Q + +ASG+ T
Sbjct: 125 LRCPATYLAKQETCAAFASGKGT 147
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 68 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 169
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 63.7 bits (148), Expect = 3e-11
Identities = 28/82 (34%), Positives = 48/82 (58%)
Frame = +1
Query: 268 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 447
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 448 PAMYVAIQAVLSLYASGRTTVS 513
P++ I + S Y + + + S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 178
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 32.3 bits (70), Expect = 0.073
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 510 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 659
IVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 168 IVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/77 (29%), Positives = 45/77 (58%)
Frame = +1
Query: 277 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 456
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 457 YVAIQAVLSLYASGRTT 507
Y+ QAV +A+ ++T
Sbjct: 134 YLTKQAVCVAFANSKST 150
Score = 39.1 bits (87), Expect = 6e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = +2
Query: 68 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 247
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 248 ---GIRPSNTPSN---TESSLTGMTWRR 313
G+ N SN + T TW R
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWER 89
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 49.6 bits (113), Expect = 5e-07
Identities = 23/67 (34%), Positives = 41/67 (61%)
Frame = +3
Query: 510 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 689
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 690 DIKEKLC 710
+IKE +C
Sbjct: 217 EIKESVC 223
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 268 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 435
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 436 TFNTPAMYVAIQAVLSLYASG 498
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 128 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIRPSNTPSNTESSL 292
G+ PRA F ++ P H G+++ M KD G+E S +G + TP N S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTPENEISEV 554
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.097
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 328 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 471
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.39
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 225 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 64
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.5 bits (63), Expect = 0.52
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 266 YLRVGYLFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 147
Y + L + L+ K+PS PY SRP A S TR
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 513 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 659
V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 295 VVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 228 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 112
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = +2
Query: 95 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKRGIR 256
N +GM + R F S VG + VG Q+DSY+ D++ S+R R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSERSYR 376
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 370 LLTEAPLNPKANREKMTQIMFETFN 444
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 406 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTRDTHSPTP 582
RE++ Q+ + P+ Y+ LS Y S + P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYRSPNSY----------PSLLPSTHSPHSPAP 182
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +2
Query: 446 RPPCTSPSKPCSRCTRPVVPPYRAGLRRRCLPHRAHLRGIRTPPRHPASGLSRSRPHRLP 625
+PP S S+ S P PP G LP + TPP L S P LP
Sbjct: 375 QPPPLSSSRAVSN--PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432
Query: 626 HEDP 637
P
Sbjct: 433 PSAP 436
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +2
Query: 464 PSKPCSRCTRPVVPPYRAGLRRRCLPHRAHLRGIRTPPRHPASGLSRSRP 613
P P R P PP A R P + R + PP P + RS P
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 110 TYRSHCLLPTRQLLRRTS*ISEI 42
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 502 TTVSCWTPATVSPTPCPSTRDT 567
TT S TPA V P P PST T
Sbjct: 838 TTSSHITPADVHPLPPPSTSTT 859
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,739
Number of Sequences: 5004
Number of extensions: 75831
Number of successful extensions: 299
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -