Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30710
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   2.0  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    27   3.5  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   8.0  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = -1

Query: 447  VKWLLEPIDIYDVNAPSTLRYKF*GLKYSYNGCSTVQTETTVSRQK*AGWWYLPARTHKR 268
            VK  + P+D    N+PST+  K    + + N  ++V+ +T ++R+          R H+ 
Sbjct: 1528 VKSSISPLDANIPNSPSTITAKPLNDEKAINNENSVKQKTVITRKDVVSKVLALFRPHRE 1587

Query: 267  SYHQ 256
            +Y++
Sbjct: 1588 TYYR 1591


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 319 AAEIGRVVVPTRADSQEVLPPVSKSTAFARASVSNDLWLEP 197
           A E  R +    A+   V PP   +T F RAS   D++ +P
Sbjct: 184 AEETLRQLAQQVAEKMNVSPPTKFTTTFPRASYGTDVFDKP 224


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 307 GRVVVPTRADSQEVLPPVSKSTAFARASVSNDLW 206
           G++ VP+R +S       S S  FA  S+SN+ W
Sbjct: 93  GKLPVPSRNNSYLQGTAESNSGNFANNSISNNCW 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,793
Number of Sequences: 5004
Number of extensions: 46894
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)