Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30710
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical p...    30   1.4  
AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear recep...    30   1.4  
Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear recep...    28   7.5  

>Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical
           protein F09C6.9 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 95  LTTTVEYISTFLFFLLLRWVDEF--TAHLVLS 6
           L TTVEY  TF+FF  L   D+F  T H+ LS
Sbjct: 266 LFTTVEYAKTFMFFHRLDSRDKFILTKHITLS 297


>AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear receptor
           NHR-116 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 95  LTTTVEYISTFLFFLLLRWVDEF--TAHLVLS 6
           L TTVEY  TF+FF  L   D+F  T H+ LS
Sbjct: 266 LFTTVEYAKTFMFFHRLDSRDKFILTKHITLS 297


>Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical
           protein F57A10.5 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 104 FRALTTTVEYISTFLFFLLLRWVDE--FTAHLVLS 6
           F  L TTVEY  TF+FF  L   D+   T H+ L+
Sbjct: 258 FYNLLTTVEYAKTFMFFHRLSSRDKLILTRHVALA 292


>AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear receptor
           NHR-60 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 104 FRALTTTVEYISTFLFFLLLRWVDE--FTAHLVLS 6
           F  L TTVEY  TF+FF  L   D+   T H+ L+
Sbjct: 257 FYNLLTTVEYAKTFMFFHRLSSRDKLILTRHVALA 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,258,157
Number of Sequences: 27780
Number of extensions: 266298
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)