Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30708
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.2  
06_01_0092 - 775290-775691                                             28   6.2  
05_03_0258 - 11153709-11156090                                         28   6.2  
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    27   8.2  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   8.2  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 71  ITIHWPSFYNVV-TGKTLALPNLIALQH 151
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 191 RASSLLRQLAKGGCAARR 138
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 254 INAYNLPFAIQVRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 123
           +N YNL F +  +   + R      +L ++++ GC   R++W T
Sbjct: 391 VNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 104 VTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAP 223
           +TG+T+ +P +IA   I + P    +++P P   P+   P
Sbjct: 401 ITGQTIPMPPIIAAPAITVMPPPAPSQQPQPPPPPSHPTP 440


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 83  WPSFYNVV-TGKTLALPNLIALQH 151
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,282,377
Number of Sequences: 37544
Number of extensions: 340458
Number of successful extensions: 829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)