Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30703
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    28   0.59 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   0.78 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   0.78 
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   1.8  
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.5  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    24   7.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    24   9.6  

>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 22/85 (25%), Positives = 35/85 (41%)
 Frame = +1

Query: 25  LRVVLPLNSTQLLFVFVKVKVTYLVKMSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYG 204
           ++++ PL  TQ   V  ++K  Y+   +   +  F   E ++L D   N       LFY 
Sbjct: 226 MKMLKPLRITQPEGVNFRIKGRYIEWQNFCFHIGFNYREGIVLSDVVFNEDGHLRPLFYR 285

Query: 205 NAFIVSAIPIWLXWRVHHWK*APQL 279
            +    A+P       HH K A  L
Sbjct: 286 ISLTEMAVPFGAKGHSHHRKHAYDL 310


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 70  FVKVKVTYLVKMSGKNN-KAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAI 228
           F++VK+   + + G+NN K + K  +LL Q  +   S++++    GNA +  A+
Sbjct: 272 FLQVKILQFLSILGQNNPKIYDKMSDLLAQVCTNTDSSRNA----GNAILYQAV 321


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -1

Query: 332 VGKSQQPGASCRYQDKPNNCGAYFQ*CTLQXNQIGIAETIKAFP*KRADDFVDTFRL 162
           + K+     SC YQ  PN+   + + C    N+I I++  K F  KRA   +DT RL
Sbjct: 22  IHKNLHISKSCSYQKVPNSHKEFTKFCYEVYNEIKISD--KEFKEKRA--ALDTLRL 74


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -1

Query: 296 YQDKPNNCGAYFQ*CTLQXNQIGI---AETIKAFP*KRADDFVDTF---RLKSCNNNSSS 135
           YQD P + GAYF+   +Q ++  I   +E  K       D  V +F    LK  +NNS++
Sbjct: 124 YQDLPRDYGAYFR-KMIQIDEANITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNT 182

Query: 134 F 132
           F
Sbjct: 183 F 183


>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 204 ERFYCFSNSNLVVLEGTSLE 263
           + F CF N+ L++L G  LE
Sbjct: 13  KEFACFGNNYLIILPGIMLE 32


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +1

Query: 112 KNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLXWRVHHWK*APQLFGLS 291
           +N +  + E E     F  ++ ++SS   Y  A  VS + + L W V      P LF L 
Sbjct: 9   ENGQLLSSENEAS-SPFKESIPSRSS--LYLIALTVSLLGVQLTWSVELGYGTPYLFSLG 65

Query: 292 W*RQLAPGCWL 324
             ++     W+
Sbjct: 66  LRKEWTSIIWI 76


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 185 DFVDTFRLKSCNNNSSSFVKALLFF 111
           D ++T R+++C    SSF +  LF+
Sbjct: 696 DIINTLRMENCLELKSSFNRPNLFY 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,347
Number of Sequences: 5004
Number of extensions: 26402
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)