Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30703
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   6.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.5  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          20   8.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 31  VVLPLNSTQLLFVFVKVKVTYLV 99
           +VLPL +  LLF F+   V+ LV
Sbjct: 291 LVLPLIAKYLLFTFIMNTVSILV 313


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 147 IVARF*PECVHKIVCSLLRERFYCFSNSN 233
           +V  F   C+H  V S+L    YC S  N
Sbjct: 30  LVRAFCRNCIHPTVFSVLFWLGYCNSAIN 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 147 IVARF*PECVHKIVCSLLRERFYCFSNSN 233
           +V  F   C+H  V S+L    YC S  N
Sbjct: 478 LVRAFCRNCIHPTVFSVLFWLGYCNSAIN 506


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +1

Query: 16  LGILRVVLPLNSTQLLFVFVKVKVTYLVKMSGKNNKAFTKEEELLLQDF 162
           LG++  V  + S+    V    KV      SG+     TK   L++  F
Sbjct: 72  LGLIVPVFTIVSSYAAIVLTLKKVRKRAGASGRREAKITKMVALMITAF 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,340
Number of Sequences: 438
Number of extensions: 1962
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)