Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30702
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0371 + 7858170-7859624                                           29   4.1  
06_03_0887 + 25688726-25689616,25689759-25690406                       27   9.6  

>03_02_0371 + 7858170-7859624
          Length = 484

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 442 HFNTSRTVTHLQQFSPTIILISLEFHSLCSL 534
           HF+  R  T     SPT +L  L F S+CSL
Sbjct: 27  HFHHHRLATRHHHPSPTSLLSKLAFWSVCSL 57


>06_03_0887 + 25688726-25689616,25689759-25690406
          Length = 512

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 498 YYRRRKLL*MGHGS*GIKMLPLPVHNNAAASIHHIKASFVLYEGSSNLAKGASTSNFIRV 319
           + RRR+     HG  G+++ P P       S+HH+ A  + +    +LA+       +R+
Sbjct: 20  FARRRRSAAAAHGDAGLRLPPGPWQLPVIGSLHHL-AGKLPHRAMRDLARRHGPVMMLRL 78

Query: 318 VFNPTTV 298
              PT V
Sbjct: 79  GEVPTLV 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,036,381
Number of Sequences: 37544
Number of extensions: 251347
Number of successful extensions: 435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)