Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30702
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical ...    29   2.8  
U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical
           protein R155.4 protein.
          Length = 873

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 278 THKKNVFTVVGLNTTLIKLLV-LAPFARLELPSYNTNEA-FMWCIEAAA 418
           T KKN+  ++GL   L KLL  L  F +   PS +TN A F    EAAA
Sbjct: 655 TDKKNMKVLIGLGDELEKLLSDLNLFVKSVKPSNSTNLADFAGIFEAAA 703


>U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical
           protein C18B2.5b protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 426 HNNAAASIHHIKASFVLYEGSSNLAKGASTSNF-IRVVFNPTTVNT 292
           H N  AS HH + + V+  GS+     A T +  +  VFN   +N+
Sbjct: 160 HRNQYASEHHPQNASVVSNGSAKRHAAARTGSLVVNNVFNDLNINS 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,069
Number of Sequences: 27780
Number of extensions: 250555
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)