Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30701
(456 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 100 1e-22
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 100 1e-22
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 1.8
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 5.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 5.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 7.3
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 25 7.3
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 9.6
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 100 bits (239), Expect = 1e-22
Identities = 50/84 (59%), Positives = 58/84 (69%)
Frame = +3
Query: 3 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
Y HRT++N KIYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+
Sbjct: 272 YMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVML 324
Query: 183 KGCCMGPKKRIITLRKSLRVHTKR 254
G GP KR++TLRKSL HT R
Sbjct: 325 NGATPGPVKRVLTLRKSLLTHTSR 348
Score = 63.3 bits (147), Expect = 2e-11
Identities = 27/37 (72%), Positives = 33/37 (89%)
Frame = +2
Query: 257 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 367
ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 350 ALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 100 bits (239), Expect = 1e-22
Identities = 50/84 (59%), Positives = 58/84 (69%)
Frame = +3
Query: 3 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
Y HRT++N KIYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+
Sbjct: 272 YMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVML 324
Query: 183 KGCCMGPKKRIITLRKSLRVHTKR 254
G GP KR++TLRKSL HT R
Sbjct: 325 NGATPGPVKRVLTLRKSLLTHTSR 348
Score = 63.3 bits (147), Expect = 2e-11
Identities = 27/37 (72%), Positives = 33/37 (89%)
Frame = +2
Query: 257 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 367
ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 350 ALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 346 HGYTQEGSYSRRSCGYHNPS 405
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.0 bits (52), Expect = 5.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 204 KKRIITLRKSLRVHTKRLH*KRSTSN 281
+KR + +SL+ H K+LH K++ S+
Sbjct: 655 EKRRLAYEESLKRHAKKLHEKKTKSS 680
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 5.5
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 125 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMI 3
N FL + SRC V N+ I + V S ++F++ M+
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMM 407
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.6 bits (51), Expect = 7.3
Identities = 22/97 (22%), Positives = 35/97 (36%)
Frame = +3
Query: 75 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 254
V+ ++T S TP P G+ P+KR R H+KR
Sbjct: 429 VVPQESATATPKRSPSATPTSALPPIGKFAPPTTA--KAQPAPEKRRGEPAVQTRNHSKR 486
Query: 255 LH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 365
S+ TPR +V + + + L H+R+
Sbjct: 487 TRTATSSVEETTPRAFNVPIAQNKNPSELEFLEHARQ 523
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 279 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKK 383
NS+ PR + R+ L L + HS+R F K
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYK 648
>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 116
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 208 FLGPMQQPLIITKSLFTSP 152
FL Q+PLIITK +++P
Sbjct: 13 FLKNPQKPLIITKRFYSTP 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,403
Number of Sequences: 5004
Number of extensions: 39222
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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