Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30701
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   114   2e-26
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   114   2e-26
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...   114   2e-26
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   114   2e-26
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   114   2e-26
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...   114   2e-26
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   114   2e-26
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   114   2e-26
U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AC024755-5|AAK84601.1|  153|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z83220-3|CAB05702.1|  493|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ...    27   8.6  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  114 bits (275), Expect = 2e-26
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           +HHRT +N KIYRIG+    ++GK   NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 274 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 330

Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
           +G  +GPKKR+ITLRKSL   TKR+
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRV 355



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
           K  A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  114 bits (275), Expect = 2e-26
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           +HHRT +N KIYRIG+    ++GK   NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 274 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 330

Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
           +G  +GPKKR+ITLRKSL   TKR+
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRV 355



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
           K  A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score =  114 bits (275), Expect = 2e-26
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           +HHRT +N KIYRIG+    ++GK   NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 176 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 232

Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
           +G  +GPKKR+ITLRKSL   TKR+
Sbjct: 233 RGAVLGPKKRLITLRKSLITQTKRV 257



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
           K  A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 255 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  114 bits (275), Expect = 2e-26
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           +HHRT +N KIYRIG+    ++GK   NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 226 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 282

Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
           +G  +GPKKR+ITLRKSL   TKR+
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRV 307



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
           K  A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 305 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  114 bits (275), Expect = 2e-26
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           +HHRT +N KIYRIG+    ++GK   NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 274 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 330

Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
           +G  +GPKKR+ITLRKSL   TKR+
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRV 355



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
           K  A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score =  114 bits (275), Expect = 2e-26
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           +HHRT +N KIYRIG+    ++GK   NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 176 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 232

Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
           +G  +GPKKR+ITLRKSL   TKR+
Sbjct: 233 RGAVLGPKKRLITLRKSLITQTKRV 257



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
           K  A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 255 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  114 bits (275), Expect = 2e-26
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           +HHRT +N KIYRIG+    ++GK   NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 226 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 282

Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
           +G  +GPKKR+ITLRKSL   TKR+
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRV 307



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
           K  A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 305 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  114 bits (275), Expect = 2e-26
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           +HHRT +N KIYRIG+    ++GK   NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 274 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 330

Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
           +G  +GPKKR+ITLRKSL   TKR+
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRV 355



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
           K  A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396


>U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical
           protein ZK682.5 protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 276 SNSLTPRPSSVMVDSRRRLTRLHSWVHS 359
           +NSLT  PSS +V+ R  LT L+  ++S
Sbjct: 195 TNSLTSIPSSALVNQRNTLTNLNLGLNS 222


>AC024755-5|AAK84601.1|  153|Caenorhabditis elegans Hypothetical
           protein Y34B4A.5 protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 442 LFSRTTLKLRSSRWGCGSRSFFANTILLECTHECS 338
           LF  ++    SS WGC         +L +C+ +CS
Sbjct: 117 LFDHSSCNSESSWWGCEYARQAGRAVLHDCSLQCS 151


>Z83220-3|CAB05702.1|  493|Caenorhabditis elegans Hypothetical
           protein C34B7.3 protein.
          Length = 493

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = -2

Query: 269 SFLVQPLCMHTQRLSKSNDTLFRSHAATLDHHKVVVYFTIMGETSHWCNGFLRQV 105
           ++L +PL +   R +++ND + ++    L  HK  + +    E S + + FL+++
Sbjct: 221 AYLDKPLSLGIPRTTRANDAIIQNLEQALAKHKTGINYD--EEPSSYMDAFLKEM 273


>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1b protein.
          Length = 1021

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 237 RVHTKRLH*KRSTSNSLTPRPSS 305
           RVHT+R H  +++S S  PRP S
Sbjct: 86  RVHTERRHHHQTSSPSQYPRPPS 108


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1a protein.
          Length = 1085

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 237 RVHTKRLH*KRSTSNSLTPRPSS 305
           RVHT+R H  +++S S  PRP S
Sbjct: 86  RVHTERRHHHQTSSPSQYPRPPS 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,911,766
Number of Sequences: 27780
Number of extensions: 226968
Number of successful extensions: 607
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)