Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30700
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   100   1e-22
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   100   1e-22
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   1.9  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   5.9  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   5.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   7.9  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   7.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  100 bits (239), Expect = 1e-22
 Identities = 50/84 (59%), Positives = 58/84 (69%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           Y HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+
Sbjct: 272 YMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVML 324

Query: 183 KGCCMGPKKRIITLRKSLRVHTKR 254
            G   GP KR++TLRKSL  HT R
Sbjct: 325 NGATPGPVKRVLTLRKSLLTHTSR 348



 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = +2

Query: 257 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 367
           ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 350 ALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  100 bits (239), Expect = 1e-22
 Identities = 50/84 (59%), Positives = 58/84 (69%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           Y HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+
Sbjct: 272 YMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVML 324

Query: 183 KGCCMGPKKRIITLRKSLRVHTKR 254
            G   GP KR++TLRKSL  HT R
Sbjct: 325 NGATPGPVKRVLTLRKSLLTHTSR 348



 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = +2

Query: 257 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 367
           ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 350 ALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 HGYTQEGSYSRRSCGYHNPS 405
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 204 KKRIITLRKSLRVHTKRLH*KRSTSN 281
           +KR +   +SL+ H K+LH K++ S+
Sbjct: 655 EKRRLAYEESLKRHAKKLHEKKTKSS 680


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 125 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMI 3
           N FL  +  SRC V  N+ I + V S    ++F++     M+
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMM 407


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 22/97 (22%), Positives = 35/97 (36%)
 Frame = +3

Query: 75  VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 254
           V+   ++T       S TP    P  G+              P+KR        R H+KR
Sbjct: 429 VVPQESATATPKRSPSATPTSALPPIGKFAPPTTA--KAQPAPEKRRGEPAVQTRNHSKR 486

Query: 255 LH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 365
                S+    TPR  +V +   +  + L    H+R+
Sbjct: 487 TRTATSSVEETTPRAFNVPIAQNKNPSELEFLEHARQ 523


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 279 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKK 383
           NS+ PR   +    R+ L  L +  HS+R  F  K
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYK 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,740
Number of Sequences: 5004
Number of extensions: 40419
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)