Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30700
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   115   2e-26
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   115   2e-26
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    29   1.5  
06_01_1013 - 7931756-7935109                                           27   5.9  
11_01_0119 - 931934-932359,933409-933564                               27   7.8  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  115 bits (276), Expect = 2e-26
 Identities = 53/85 (62%), Positives = 65/85 (76%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           YHHRTEMNKK+Y+IG     K G+   + A TE+D +EK ITPMGGFPHYG V  D++MI
Sbjct: 275 YHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMI 328

Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
           KGCC+GPKKR++TLR+SL   T RL
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRL 353



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +2

Query: 257 ALEKINLKFIDTSSKFGHGRFQTPADK 337
           ALE+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 354 ALEEIKLKFIDTSSKFGHGRFQTTDEK 380


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  115 bits (276), Expect = 2e-26
 Identities = 53/85 (62%), Positives = 65/85 (76%)
 Frame = +3

Query: 3   YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
           YHHRTEMNKK+Y+IG     K G+   + A TE+D +EK ITPMGGFPHYG V  D++MI
Sbjct: 275 YHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMI 328

Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
           KGCC+GPKKR++TLR+SL   T RL
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRL 353



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 26/35 (74%), Positives = 28/35 (80%)
 Frame = +2

Query: 257 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 361
           ALE+I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 354 ALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 105  DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 200
            D +  + +P+GG P YG ++ D  +   C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 376 RRSCGYHNPSGCCAPLS 426
           +++CG H  S CC PLS
Sbjct: 498 KKNCGRHRCSECCCPLS 514


>11_01_0119 - 931934-932359,933409-933564
          Length = 193

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 337 GCIHGYTQEGSYSRRSCGYHNPSG 408
           G + G++ EGS+ RRSC   N  G
Sbjct: 110 GHVPGFSIEGSFRRRSCKIRNSVG 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,037,197
Number of Sequences: 37544
Number of extensions: 266319
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)