Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30700
(477 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 114 3e-26
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 114 3e-26
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 114 3e-26
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 114 3e-26
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 114 3e-26
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 114 3e-26
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 114 3e-26
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 114 3e-26
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z83220-3|CAB05702.1| 493|Caenorhabditis elegans Hypothetical pr... 27 9.2
U40427-5|AAP82652.1| 356|Caenorhabditis elegans Abnormal cell m... 27 9.2
U40427-4|AAA81470.2| 362|Caenorhabditis elegans Abnormal cell m... 27 9.2
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ... 27 9.2
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ... 27 9.2
AF150958-1|AAD43178.1| 362|Caenorhabditis elegans guidance prot... 27 9.2
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 114 bits (275), Expect = 3e-26
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +3
Query: 3 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 274 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 330
Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
+G +GPKKR+ITLRKSL TKR+
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRV 355
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
K A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 114 bits (275), Expect = 3e-26
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +3
Query: 3 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 274 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 330
Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
+G +GPKKR+ITLRKSL TKR+
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRV 355
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
K A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 114 bits (275), Expect = 3e-26
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +3
Query: 3 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 176 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 232
Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
+G +GPKKR+ITLRKSL TKR+
Sbjct: 233 RGAVLGPKKRLITLRKSLITQTKRV 257
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
K A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 255 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 114 bits (275), Expect = 3e-26
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +3
Query: 3 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 226 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 282
Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
+G +GPKKR+ITLRKSL TKR+
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRV 307
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
K A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 305 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 114 bits (275), Expect = 3e-26
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +3
Query: 3 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 274 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 330
Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
+G +GPKKR+ITLRKSL TKR+
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRV 355
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
K A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 114 bits (275), Expect = 3e-26
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +3
Query: 3 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 176 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 232
Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
+G +GPKKR+ITLRKSL TKR+
Sbjct: 233 RGAVLGPKKRLITLRKSLITQTKRV 257
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
K A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 255 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 114 bits (275), Expect = 3e-26
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +3
Query: 3 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 226 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 282
Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
+G +GPKKR+ITLRKSL TKR+
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRV 307
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
K A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 305 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 114 bits (275), Expect = 3e-26
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +3
Query: 3 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 182
+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M+
Sbjct: 274 FHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIML 330
Query: 183 KGCCMGPKKRIITLRKSLRVHTKRL 257
+G +GPKKR+ITLRKSL TKR+
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRV 355
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 248 KEAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 379
K A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 276 SNSLTPRPSSVMVDSRRRLTRLHSWVHS 359
+NSLT PSS +V+ R LT L+ ++S
Sbjct: 195 TNSLTSIPSSALVNQRNTLTNLNLGLNS 222
>Z83220-3|CAB05702.1| 493|Caenorhabditis elegans Hypothetical
protein C34B7.3 protein.
Length = 493
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = -2
Query: 269 SFLVQPLCMHTQRLSKSNDTLFRSHAATLDHHKVVVYFTIMGETSHWCNGFLRQV 105
++L +PL + R +++ND + ++ L HK + + E S + + FL+++
Sbjct: 221 AYLDKPLSLGIPRTTRANDAIIQNLEQALAKHKTGINYD--EEPSSYMDAFLKEM 273
>U40427-5|AAP82652.1| 356|Caenorhabditis elegans Abnormal cell
migration protein13, isoform b protein.
Length = 356
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = -2
Query: 476 FFFFXFCIVKCLFSRTTLKGAXXXXXXXXXXXLREYDPS*VYP*MQPCQP 327
F F C+ KCL S +KGA + DP YP P P
Sbjct: 248 FIMFVCCLCKCLKSTIPIKGASSHTTTTTATDYKP-DPPQFYPPSPPKMP 296
>U40427-4|AAA81470.2| 362|Caenorhabditis elegans Abnormal cell
migration protein13, isoform a protein.
Length = 362
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = -2
Query: 476 FFFFXFCIVKCLFSRTTLKGAXXXXXXXXXXXLREYDPS*VYP*MQPCQP 327
F F C+ KCL S +KGA + DP YP P P
Sbjct: 254 FIMFVCCLCKCLKSTIPIKGASSHTTTTTATDYKP-DPPQFYPPSPPKMP 302
>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
protein Y46G5A.1b protein.
Length = 1021
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 237 RVHTKRLH*KRSTSNSLTPRPSS 305
RVHT+R H +++S S PRP S
Sbjct: 86 RVHTERRHHHQTSSPSQYPRPPS 108
>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
protein Y46G5A.1a protein.
Length = 1085
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 237 RVHTKRLH*KRSTSNSLTPRPSS 305
RVHT+R H +++S S PRP S
Sbjct: 86 RVHTERRHHHQTSSPSQYPRPPS 108
>AF150958-1|AAD43178.1| 362|Caenorhabditis elegans guidance protein
MIG-13 protein.
Length = 362
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = -2
Query: 476 FFFFXFCIVKCLFSRTTLKGAXXXXXXXXXXXLREYDPS*VYP*MQPCQP 327
F F C+ KCL S +KGA + DP YP P P
Sbjct: 254 FIMFVCCLCKCLKSTIPIKGASSHTTTTTATDYKP-DPPQFYPPSPPKMP 302
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,146,945
Number of Sequences: 27780
Number of extensions: 233665
Number of successful extensions: 641
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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