Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30698
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    40   3e-04
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   3.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.1  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   5.4  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   7.1  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    26   7.1  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   9.4  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.4  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.4  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 250 PVRPGNPSNPRSPLSPFSPGNPGIPEGP*SPFCPGAPN-PVAPFSP 116
           PV P  PS P+ P++P +P  P +P+ P  P  P AP+ P  P +P
Sbjct: 596 PVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAP 641



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -3

Query: 250 PVRPGNPSNPRSPLSPFSPGNPGIPEGP*SPFCPGAPN----PVAPFSP 116
           PV P   S P+ P++P +P  P +P+ P +P  P AP+    PVAP +P
Sbjct: 566 PVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAP 614



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 250 PVRPGNPSNPRSPLSPFSPGNPGIPEGP*SPFCPGAPN-PVAPFSP 116
           PV P  PS P+ P +P  P  P +P+ P  P  P AP+ P  P +P
Sbjct: 626 PVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAP 671



 Score = 33.5 bits (73), Expect = 0.035
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 250 PVRPGNPSNPRSPLSPFSPGNPGIPEGP*SPFCPGAP-NPVAPFSPR 113
           P RP  P  P +P  P  P  P +PE P  P  P  P  P AP  P+
Sbjct: 620 PQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQ 666



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = -3

Query: 256 NGPVRPGNPSNPRSPLSPFSPGNPGIPEG---P*SPFCPGAPN-PVAPFSP 116
           + P RP  P  P +P  P  P  P +PE    P  P  P AP  P  P  P
Sbjct: 543 SAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPP 593



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 250 PVRPGNPSNPRSPLSPFSPGNPGIPEGP*SPFCPGAP 140
           P RP  P  P +P  P  P  P +PE P  P  P  P
Sbjct: 650 PQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 275  GDRGYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPGPRGLPGN 403
            G+  Y    G++ EQG       A EL+  A G   P  LPGN
Sbjct: 1491 GEVDYHVARGVRSEQGSGPVTDFAIELLRTAVGGENPMALPGN 1533


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 250 PVRPGNPSNPRS--PLSPFSPGNPG 182
           PV PGNPS+  S  P + F+PG PG
Sbjct: 886 PVNPGNPSSSVSAPPTTSFTPG-PG 909


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
 Frame = -3

Query: 262  RTNGPVRPGNPSN------PRSPL---SPFSPGNPG-IPEGP*SPFCPGAPNPVAPFSP 116
            + + P  PG PSN      P +P+   +P  P  PG +   P     P  P PV+   P
Sbjct: 1429 KASQPTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPP 1487


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 89   WYYWGKRRSRREGGHWVWCT 148
            +YY G  +     GHWVW T
Sbjct: 1071 FYYDGPNKDGLASGHWVWGT 1090


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 238 GNPSNPRSPLSPFSPGNP 185
           GNPS    P +P++PG P
Sbjct: 584 GNPSTVPPPTNPYNPGYP 601


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 117 GEKGATGFGAPGQKGDQG 170
           G  GA+G G+ G++GD+G
Sbjct: 171 GAGGASGIGSSGRRGDRG 188


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 277 TFLTWRTNGPV-RPGNPSNPRSPLSPFS 197
           T  T RTN P+ RP  P+   SPL+ FS
Sbjct: 202 TLATTRTNAPLSRPSQPTK-ASPLNKFS 228


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 379 WFSFCAVHEFCRLAFITFHPLFTL*AWSSWIATI 278
           W+   A   F  +  IT +PL+ L +W+ ++  I
Sbjct: 92  WYFIRAPARFILMVGITLYPLYVLLSWAVFLGII 125


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 53  WWPCQTFITLITLLSFF 3
           WWPC+T +  + L   F
Sbjct: 83  WWPCKTTVVCLILFLLF 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,873
Number of Sequences: 5004
Number of extensions: 62825
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)