Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30698
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    31   0.012
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   7.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   7.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.9  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 505 GTRGLPGIQGMEGERGEIGMTGQSGLPGAPG 597
           G +   G+QG++G +G  G+ G  G+ G PG
Sbjct: 846 GVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 30.3 bits (65), Expect = 0.021
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 505 GTRGLPGIQGMEGERGEIGMTGQSGLPGAPGAPCVSQ 615
           G +G+   QG++G +G  G+ G  G+ G  G P + Q
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPGLLQ 879



 Score = 28.7 bits (61), Expect = 0.065
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 269 QKGDRGYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPG 382
           Q+G +G     G+QG QG++G +G   + V G +G PG
Sbjct: 841 QQGVQGVQTAQGVQGVQGVQGVQG--VQGVQGVQGVPG 876



 Score = 27.1 bits (57), Expect = 0.20
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 266 GQKGDRGYPGRPGLQGEQGMKGNKG--QAAELVYG 364
           G +G +G  G  G+QG QG++G  G  Q  + V+G
Sbjct: 852 GVQGVQGVQGVQGVQGVQGVQGVPGLLQGVQQVFG 886



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 257 GPPGQKGDRGYPGRPGLQGEQGMKGNKG 340
           G  G +  +G  G  G+QG QG++G +G
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQG 870


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 323 MKGNKGQA-AELVYGAKGEPGPRGLPGN 403
           M+ N+ Q  AE +  A+  PGP G+PG+
Sbjct: 313 MRKNRFQKIAESMKTARENPGPPGVPGD 340


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 323 MKGNKGQA-AELVYGAKGEPGPRGLPGN 403
           M+ N+ Q  AE +  A+  PGP G+PG+
Sbjct: 313 MRKNRFQKIAESMKTARENPGPPGVPGD 340


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 323 MKGNKGQA-AELVYGAKGEPGPRGLPGN 403
           M+ N+ Q  AE +  A+  PGP G+PG+
Sbjct: 252 MRKNRFQKIAESMKTARENPGPPGVPGD 279


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 241 PG-NPSNPRSPLSPFSPGNPGIPEGP*SPFCPGAP 140
           PG  PS  +SP +P     P   +GP     PGAP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 424 VYAW*TIISWQTTRSWF 374
           VY+W    SW+ T S+F
Sbjct: 219 VYSWEQNRSWRITHSYF 235


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 424 VYAW*TIISWQTTRSWFSF 368
           VY+W    SW+ T ++F F
Sbjct: 201 VYSWAKNDSWRITHNFFYF 219


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 105 KGDRGEKGATGFGAPGQKGD 164
           +G  G +G TGF    + GD
Sbjct: 92  RGRGGNRGRTGFNNKNKDGD 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,723
Number of Sequences: 438
Number of extensions: 4812
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)