Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30696
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    27   3.3  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   4.4  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   5.8  

>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 590 IKNCTILLQSTEHCIVICNIIF 525
           I+   +LL  T++C+++C I+F
Sbjct: 35  IQEAGVLLNLTQNCVIVCLILF 56


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 81  VMEKPTDVDIVETKADL-NPVLKTPMSKLILPAPVTPSENDCEENTCTTPISE 236
           ++E  T   +VE    L    + TPM +     P+       EE T TTP+ E
Sbjct: 120 MVETTTITPMVEAMITLMEETMTTPMEETTTILPMAAMTTPMEETTTTTPMVE 172


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +3

Query: 90  KPTDVDIVETKADLNPVLKTPMSKLILPAPVTPSENDCEENTCTTPISE 236
           KP   D    K ++N  +++P  K   P   TP+     E T     SE
Sbjct: 51  KPAVTDPSNAKKEINMAIESPSKKATSPKKATPAAVAPVEATSAVDTSE 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,088
Number of Sequences: 5004
Number of extensions: 40663
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)