Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30694
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.6  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   3.7  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   3.7  
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14...    29   3.7  
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711...    28   6.5  
06_01_0092 - 775290-775691                                             28   8.6  
04_04_1695 + 35433975-35437040                                         28   8.6  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 554 ITIHWPSFYNVV-TGKTLALPNLIALQH 634
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 616 LNRLAAHPPFASWRNSEEARTDRPSQQLRSWNGR 717
           L+R +   PF SW N  +A  D+ +  L   NGR
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGR 432


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 616 LNRLAAHPPFASWRNSEEARTDRPSQQLRSWNGR 717
           L+R +   PF SW N  +A  D+ +  L   NGR
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGR 437


>01_01_0020 +
           147147-147313,148450-148548,148634-148742,148856-148927,
           149056-149061,150811-150915,151048-151539,151629-152025,
           152178-153646,154010-154450,154543-155214
          Length = 1342

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +2

Query: 461 TYICT*LKNTYRLVLSAEGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQHIP 640
           T +C  L+  +R++++   GA     PI ++++  W  F  V  GK   LP   A   +P
Sbjct: 699 TLVCKQLQTVHRIIMT---GA-----PIQNKLSELWSLFDFVFPGKLGVLPVFEAEFSVP 750

Query: 641 LSPAGVIAKRPAPIALPNSCA 703
           ++  G     P  ++    CA
Sbjct: 751 ITVGGYANATPLQVSTAYRCA 771


>01_06_1061 -
           34169469-34169624,34170837-34170938,34171029-34171180,
           34172087-34172153,34172239-34172419,34172655-34172778,
           34174775-34174871,34175929-34176331,34176729-34176888,
           34177412-34177486,34177714-34177892,34178224-34178303,
           34178561-34179322
          Length = 845

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 707 QLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFS----QSRRCKTTASEL 558
           QLR+CW G  +     LR    G      ++  TPG S    ++RRC+  +S++
Sbjct: 503 QLRDCWNGELLHGGKFLR----GRRVETDMAPATPGGSSQLVENRRCQLPSSQI 552


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -2

Query: 674 RASSLLRQLAKGGCAARR 621
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>04_04_1695 + 35433975-35437040
          Length = 1021

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 553 TTHYRANWVPGPPFCAKNEPVGIFESSANIGRDIASGKNP 434
           +THY ++  P      K+ P+GI E      R++A GK+P
Sbjct: 599 STHYSSDLQPAAKKLRKS-PIGILELGILGARNLAGGKSP 637


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,967,221
Number of Sequences: 37544
Number of extensions: 315874
Number of successful extensions: 977
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)