Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30694
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   5.8  
AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 234 DKNCGKESVRKSREKSCRNCSNTN 163
           D+ CG+ES+R  R + C N  N N
Sbjct: 506 DERCGEESIR-LRNRKCMNAENNN 528


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 234 DKNCGKESVRKSREKSCRNCSNTN 163
           D+ CG+ES+R  R + C N  N N
Sbjct: 506 DERCGEESIR-LRNRKCMNAENNN 528


>AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical
           protein Y102A5D.1 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 619 NRLAAHPPFASWRNSEEARTDRPSQQLRSW 708
           N    H P  +W  S+E +  R   ++RSW
Sbjct: 306 NTGGCHLPLRTWNRSDETKLKRERGKIRSW 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,832,126
Number of Sequences: 27780
Number of extensions: 251058
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)